Locus 6734

Sequence ID 3R_DroMel_CAF1
Location 17,743,603 – 17,743,711
Length 108
Max. P 0.842811
window10936

overview

Window 6

Location 17,743,603 – 17,743,711
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.65
Mean single sequence MFE -28.61
Consensus MFE -17.26
Energy contribution -18.37
Covariance contribution 1.10
Combinations/Pair 1.25
Mean z-score -1.92
Structure conservation index 0.60
SVM decision value 0.76
SVM RNA-class probability 0.842811
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17743603 108 - 27905053
UCAGCUAACUUUGGGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGACGAUUUUUUGUUCGCCCUUU-UUUCGUU-------GCCCAGAUUAGCUUCACUUGGCCCCAAGUGG-GCUAA
..((((((.((((((.((((((.(((......)))..))))))(((((.................-..)))))-------.)))))))))))).....((((((.....))-)))). ( -30.21)
>DroSec_CAF1 32641 108 - 1
UCAGCUAACUUUGGGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGACGAUUUUUUGUUCGCCCUUU-UUUCGUU-------GCCCAAAUUAGCUUCACUUGGCCACAAGUGG-GCUAA
..((((((.((((((.((((((.(((......)))..))))))(((((.................-..)))))-------.))))))))))))(((((((....)))))))-..... ( -29.51)
>DroEre_CAF1 35001 108 - 1
UCAGCUAACUUUGGGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGACGAUUUUUUGUGCGCCCUUU-UUUCGUU-------GCCCGGAUUAGCUGCUCUUGGCCCCAAGUGG-GCUAA
.(((((((.((((((.((((((.(((......)))..))))))(((((.................-..)))))-------.)))))))))))))....((((((.....))-)))). ( -32.11)
>DroWil_CAF1 40878 82 - 1
GCAGCUAACUUUGAGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGG----------U---------------CU-------GCCUACAUUAGCUUUA--GAGCUUAAAGUGG-GCUAA
..((((.((((((((.........(((((((((....))))))))----------)---------------..-------((........))....--...)))))))).)-))).. ( -21.30)
>DroYak_CAF1 34773 108 - 1
UCAGCUAACUUUGGGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGACGAUUUUUUGUUCGCCCUUU-UUUCGUU-------GCCCAGAUUAGCUUCUCUUGGCCCCAAGUGG-GCUAA
..((((((.((((((.((((((.(((......)))..))))))(((((.................-..)))))-------.)))))))))))).....((((((.....))-)))). ( -30.21)
>DroAna_CAF1 40775 114 - 1
GCAACAAACUUUGGGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGG--UUUAUUUUGUAGCCCUUUUUUUUGUCGUCGAGUUCCCAUAUUAGCCAU-AUUAGCUCCAAGUGGAGCUCA
((.(((((....(((.(((.((..(((((((((....))))))))--).)).)))....))).....))))).)).(((((((......(((...-....)))......))))))). ( -28.30)
>consensus
UCAGCUAACUUUGGGAAAAUUGUUGCCAAAUUGCAUUCGGUUUGACGAUUUUUUGUUCGCCCUUU_UUUCGUU_______GCCCAGAUUAGCUUCACUUGGCCCCAAGUGG_GCUAA
..((((((.((((((.((((((.(((......)))..))))))(((((....................)))))........)))))))))))).....((((.((....)).)))). (-17.26 = -18.37 +   1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:38 2006