Locus 6733

Sequence ID 3R_DroMel_CAF1
Location 17,741,527 – 17,741,618
Length 91
Max. P 0.814105
window10935

overview

Window 5

Location 17,741,527 – 17,741,618
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.81
Mean single sequence MFE -19.63
Consensus MFE -12.64
Energy contribution -12.50
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.64
SVM decision value 0.66
SVM RNA-class probability 0.814105
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17741527 91 - 27905053
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUGUUCUAUAAAUAAUUCAUGUACA----GUUC-AGUUUGAUGUGCACG------------U
((((((((..(((.((((..(((((....((((((((((.....))))).)))))...)))))..)))).)----))..-...))))))))....------------. ( -19.30)
>DroVir_CAF1 31005 103 - 1
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUGUUCUAUAAAUAAUUGAUGUGCC----GUUC-AACGUGUGCUACUCAAUCCCCUUCUGAC
(((((((((((.((((((((......))))))))(((...(((....)))...)))..)))))))))))..----....-............................ ( -20.70)
>DroPse_CAF1 33520 99 - 1
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUGUUCUAUAAAUAAUUCAUGUACA----GGUC-GGCCUGAUGUGCGUCCC----CCUCCAC
.((((.(((((.((((((((......))))))))(((...(((....)))...)))..))))).)))).((----((..-..))))...........----....... ( -18.90)
>DroGri_CAF1 28328 103 - 1
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUAUUCUAUAAAUAAUUGAUGUGCC----GUUA-AACGUGUUUUACACAACACUCACCCUAC
(((((((((((...((((((......))))))(((((((.....))))))).......)))))))))))..----....-...(((((......)))))......... ( -23.60)
>DroWil_CAF1 38199 89 - 1
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUGUUCUAUAAAUAAUUUAUGUACCUACAUUUUGCGUUUUAUG-------------------
...............(((((((.((((((((((((((((.(((....))).....)))).))))))))).)))...)))))))......------------------- ( -16.40)
>DroPer_CAF1 33399 103 - 1
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUGUUCUAUAAAUAAUUCAUGUACA----GGUC-GGCCUGAUGUGCGUCCCCCCCCCUCCAC
.((((.(((((.((((((((......))))))))(((...(((....)))...)))..))))).)))).((----((..-..))))...................... ( -18.90)
>consensus
CACAUCGAUUACUUUACGCAAAUUAGUGCGUAGAUAUUUUGCAAAAAUGUUCUAUAAAUAAUUCAUGUACA____GUUC_AGCCUGAUGUGCACA_C_____C_C_AC
.((((.(((((...((((((......))))))(((((((.....))))))).......))))).))))........................................ (-12.64 = -12.50 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:36 2006