Locus 6731

Sequence ID 3R_DroMel_CAF1
Location 17,731,626 – 17,731,735
Length 109
Max. P 0.895551
window10930

overview

Window 0

Location 17,731,626 – 17,731,735
Length 109
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 90.23
Mean single sequence MFE -32.16
Consensus MFE -31.54
Energy contribution -31.58
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -1.34
Structure conservation index 0.98
SVM decision value 0.99
SVM RNA-class probability 0.895551
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17731626 109 + 27905053
AAUUUCUCUUA----AAAUUUUUGCAGUGUACGGCUUAGCAGAUCUUUGGCUCAAUGGAUGCUCAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUC
...........----........((.((((((((((..((((..((((((((....((.(((.....))).)).))))))))..))))))))))))))..))........... ( -33.70)
>DroSec_CAF1 20653 113 + 1
AAUUUUUCUUCAGUUAAAUUUCUGCAGUGUACGGCUUAGCAAAUCUUUGGCUCAAUGGAUGCUCAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUC
....................((.((.((((((((((..((((..((((((((....((.(((.....))).)).))))))))..))))))))))))))..)).))........ ( -35.10)
>DroSim_CAF1 21000 113 + 1
AAUUACUCUUCAGCUAAAUUUCUGCAGUGUACGGCUUAGCAGAUCUUUGGCUCAAUGGAUGCUCAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUC
.........((((((...........((((((((((..((((..((((((((....((.(((.....))).)).))))))))..)))))))))))))).))))))........ ( -36.70)
>DroEre_CAF1 22828 107 + 1
AUUU--UCGAA----UGAUUUCCGCAGUGCACGGCUUGGCAGAUCUUUGGCUCAAUGGAUGCUCAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUC
....--..((.----.((((.(((..(((.((((((..((((..((((((((....((.(((.....))).)).))))))))..)))))))))).))))))..)))).))... ( -33.10)
>DroYak_CAF1 22113 107 + 1
AUUU--UCCAA----AUAUUUUUGCAGUGCACGACUUAACAGAUCUUUGGCUCAAUGGAUGCUCAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUC
....--.....----........((.(((.(((.((..((((..((((((((....((.(((.....))).)).))))))))..)))))).))).)))..))........... ( -22.20)
>consensus
AAUU__UCUUA____AAAUUUCUGCAGUGUACGGCUUAGCAGAUCUUUGGCUCAAUGGAUGCUCAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUC
....................((.((.((((((((((..((((..((((((((....((.(((.....))).)).))))))))..))))))))))))))..)).))........ (-31.54 = -31.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:32 2006