Locus 6730

Sequence ID 3R_DroMel_CAF1
Location 17,729,435 – 17,729,533
Length 98
Max. P 0.534050
window10929

overview

Window 9

Location 17,729,435 – 17,729,533
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 87.80
Mean single sequence MFE -21.58
Consensus MFE -16.00
Energy contribution -16.76
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.74
SVM decision value 0.00
SVM RNA-class probability 0.534050
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17729435 98 + 27905053
U-UUUGCAAGUAAAUACUUGCCAUUUUCUUAGAGUGCAUUGCCAAUUGCGCUUGUGGCGCUGCAGUUGCUUCUAAUUUUUACAAAAGUACAAAAAGUGC
.-...((((((....)))))).......((((((.(((((((.....((((.....)))).)))).)))))))))...........((((.....)))) ( -25.30)
>DroSec_CAF1 18484 87 + 1
UCUUUGA----AAAUA--------UUUCUUACAGUGCAUUGCCAAUUGGGCUUGUGGCACUGCAGUUGCUUCUAAUUUUUACGAAAGUACAAAAAGUGC
..((((.----.....--------.......((((((...(((.....))).....)))))).................(((....)))))))...... ( -18.40)
>DroSim_CAF1 18813 87 + 1
UAUUUGA----AAAUA--------UUUCUUAGAGUGCAUUGCCAAUUGCGCUUGUGGCGCUGCAGUUGCUUCUAAUUUUUACGAAAGUACAAAAAGUGC
..((((.----.....--------....((((((.(((((((.....((((.....)))).)))).)))))))))....(((....)))))))...... ( -21.90)
>DroEre_CAF1 20932 87 + 1
UAUUUGG----CUAUU--------UUUCUGCGAGUGCAUUGUCAAUUGCGCUUGUGGCGCUGCAGUUGCUUCUAAUUUUUACGAAAGUACAAAAAGUGC
.......----.....--------.....(((((((((........))))))))).(((((((....))......(((.(((....))).))).))))) ( -22.50)
>DroYak_CAF1 20103 87 + 1
UAUUUGG----AAAUA--------UUUCUUUGAGUGCAUUGUCAAUUGCGCUUGUGGCGCUGCAGUUGCUUCUAAUAUUUACGAAAGUACAAAAAGUGC
...((((----((...--------.......(((((((........)))))))(..((......))..)))))))....(((....))).......... ( -19.80)
>consensus
UAUUUGA____AAAUA________UUUCUUAGAGUGCAUUGCCAAUUGCGCUUGUGGCGCUGCAGUUGCUUCUAAUUUUUACGAAAGUACAAAAAGUGC
..((((......................((((((.(((((((.....((((.....)))).)))).)))))))))....(((....)))))))...... (-16.00 = -16.76 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:30 2006