Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,441,707 – 2,441,812 |
Length | 105 |
Max. P | 0.671174 |
Location | 2,441,707 – 2,441,812 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -23.14 |
Energy contribution | -25.42 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.29 |
Mean z-score | -1.74 |
Structure conservation index | 0.61 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2441707 105 - 27905053 ----------UUCCAUUUAUACAG-----GCGGGCUGCUGUCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGCCUCUGACCGAGAGCAUUGAGGCCCAGGCAAGCAGAAACUUGGCAAAC ----------...........(((-----(....(((((..((.(((..((..(((((....)))))..))(((((....(....)....))))))))))..)))))...))))...... ( -34.00) >DroSec_CAF1 1166 105 - 1 ----------UACUAUUUAUACAG-----GCGGGCUGCUGCCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGGCUCUGACCGAGAGCAUUGAGGCCCAGCCAAGCAGAAACUUGGCAAAC ----------..............-----..(((((..(((.(.(((.(((((((((..((....))..))))))))).))).).)))....))))).((((((......)))))).... ( -45.20) >DroEre_CAF1 2209 105 - 1 ----------UACUAUUUAUACAG-----GCGGGCUGCUGCCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGGCUCUGACCGAGAGCAUUGAGACCCAGCCAAGCAGAAACUUGGCAAAC ----------...........(((-----((((((....))))))((.(((((((((..((....))..))))))))).)).......))).......((((((......)))))).... ( -42.80) >DroYak_CAF1 2319 105 - 1 ----------UACAAUUUAUACAG-----CCGGGCUGCUGCCCGUGGAUAGAGCUGGUUCCGACUGGUCCUGGCUCUGAGCGAGAGCAUUGAGGCUCAUCCGAGCAGAAACUUGGCAAAC ----------.............(-----(((((...((((...((((((((((..(..((....))..)..)))))......((((......))))))))).))))...)))))).... ( -41.00) >DroAna_CAF1 1793 112 - 1 UGAGCCCCUUUUCCCAGUACAUAGGCUUGGCCAGCUUCUA-CCAUUGCUGCAGCC-------UCUGUUUCGGACUCUGACCAAAAGCAUUGAAACUCAACGAAGCAGAAACUUGGCAAAC ...(((.................((((..((.(((.....-.....)))))))))-------((((((((((.......)).......(((.....))).)))))))).....))).... ( -25.50) >consensus __________UACCAUUUAUACAG_____GCGGGCUGCUGCCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGGCUCUGACCGAGAGCAUUGAGGCCCAGCCAAGCAGAAACUUGGCAAAC ...............................(((((..(((...(((.(((((((((..((....))..))))))))).)))...)))....))))).((((((......)))))).... (-23.14 = -25.42 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:58 2006