| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,720,714 – 17,720,815 |
| Length | 101 |
| Max. P | 0.552566 |
| Location | 17,720,714 – 17,720,815 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.23 |
| Mean single sequence MFE | -10.22 |
| Consensus MFE | -5.54 |
| Energy contribution | -5.98 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17720714 101 - 27905053 ACGAAAAUAACUGCAAGAUAUAUUAAUAAAGCA--AAAAUUCAUAUAUGAAAUUUUAAUAUGCAA-ACGAGCAAAAA-GCAGAGGGUAAAGCUUACGAAAAAAA---A .((.......((((..................(--(((.((((....)))).))))....(((..-....)))....-)))).(((.....))).)).......---. ( -11.00) >DroVir_CAF1 11793 85 - 1 ACAAAAAUAACUGCUAGAU--AUUAAUAAAGC-AAAAAAUUCAU--AUGAAAUUUUAAUAUGCAAAGCGAGCGAAAA-GCAGAAGGCAAA-----------------A ..........(((((..((--(((((.....(-(..........--.)).....)))))))((.......))....)-))))........-----------------. ( -9.50) >DroGri_CAF1 10580 85 - 1 ACAAAAAUAACUGCUAGAU--AUUAAUAAAGCAAAAAAAUGCAU--AUGAAAUUUUAAUAUGCAA-ACGAGCGAAAA-GCAAAAGGCAAA-----------------A ...........((((....--..................(((((--((.........))))))).-....((.....-))....))))..-----------------. ( -12.50) >DroEre_CAF1 12026 104 - 1 ACGAAAAUAACUGCAAGAUAUAUUAAUAAAGCA--AAAAUUCACAUAUGAAAUUUUAAUAUGCAA-ACGAGCAAAAA-GCAGAGGGUAAAGCUUACAAAAAAAAAAAA ..........((((..................(--(((.((((....)))).))))....(((..-....)))....-)))).......................... ( -10.10) >DroYak_CAF1 10582 91 - 1 ACGAAAAUAACUGCAAGAUAUAUUAAUAAAGCA--AAAAUUCAUAUAUGAAAUUUUAAUAUGCAA-ACGAGCAAAAA-GCAGAGGGUAC-------------AAAAAA ..........((((..................(--(((.((((....)))).))))....(((..-....)))....-)))).......-------------...... ( -10.30) >DroAna_CAF1 10352 84 - 1 ACGAAAAUAACUGCAAGAUAUAUUAAUAGAGCG--AAAAUUCAU--AUGAAAUUUUAAUAUGCAA-ACGGGCAAAAAAGCCAAAAG---------------GA----G ...........((((.(.(((....)))...)(--(((.(((..--..))).))))....)))).-...(((......))).....---------------..----. ( -7.90) >consensus ACGAAAAUAACUGCAAGAUAUAUUAAUAAAGCA__AAAAUUCAU__AUGAAAUUUUAAUAUGCAA_ACGAGCAAAAA_GCAGAAGGUAAA____________A____A ..........((((.........................((((....)))).........(((.......))).....)))).......................... ( -5.54 = -5.98 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:25 2006