Locus 6726

Sequence ID 3R_DroMel_CAF1
Location 17,718,023 – 17,718,134
Length 111
Max. P 0.995236
window10922

overview

Window 2

Location 17,718,023 – 17,718,134
Length 111
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 86.56
Mean single sequence MFE -27.85
Consensus MFE -25.44
Energy contribution -25.12
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -2.28
Structure conservation index 0.91
SVM decision value 2.55
SVM RNA-class probability 0.995236
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17718023 111 + 27905053
GCUCCAUUCAUGUGACGACGAAAGUGUCAAGUGGCUGUUGGCAACUCGUCGUCGACGAGCAAAACUUCCCAACCUUCCCACCCAAAAAAAAAA------AAAA--AAAAAGUGGGAAAA
((((........(((((((((...((((((.......))))))..)))))))))..))))..............(((((((............------....--.....))))))).. ( -31.40)
>DroSec_CAF1 7282 104 + 1
GCUCCAUUCAUGUGACGACGGAAGUGUCAAGUGGCUGUUGGCAACUCGUCGUCGACGAGCAAAACUUCCCAACCUUUCCACCAAAAA------------AAA---AAAAAGUGGAAAAA
((((...((((.((((.((....)))))).))))..((((((........))))))))))..............(((((((......------------...---.....))))))).. ( -29.24)
>DroSim_CAF1 7411 105 + 1
GCUCCAUUCAUGUGACGACGGAAGUGUCAAGUGGCUGUUGGCAACUCGUCGUCGACGAGCAAAACUUCCCAACCUUUCCACCAAAAA------------AAAA--AAAAACUGGAAAAC
((((...((((.((((.((....)))))).))))..((((((........))))))))))..............((((((.......------------....--......)))))).. ( -26.03)
>DroEre_CAF1 9314 108 + 1
GCUCCAUUCAUGUGACGACGGAAGUGUCAAGUGGCUGUUGGCAACUCGUCGUCGACGAGCAAAACUUCCCAACCUUUCCACCC--------ACCAAAAAUAAA--AAAAAGAGGAAUA-
..(((.......((((.((....)))))).((((..(((((.((((((((...))))))......)).)))))....))))..--------............--.......)))...- ( -25.50)
>DroYak_CAF1 7745 119 + 1
GCUCCAUUCAUGUGACGACGGAAGUGUCAAGUGGCUGUUGGCAACUCGUCGUCGACGAGCAAAACUUCCCAACCUUCCCGCCAAAAAAAACAACAAAAAAAAAUGAAAAAGAGGAAAAG
.(((..(((((.((((.((....)))))).((((..(((((.((((((((...))))))......)).)))))....)))).....................)))))...)))...... ( -27.10)
>consensus
GCUCCAUUCAUGUGACGACGGAAGUGUCAAGUGGCUGUUGGCAACUCGUCGUCGACGAGCAAAACUUCCCAACCUUUCCACCAAAAA____A_______AAAA__AAAAAGUGGAAAAA
..(((.......((((.((....)))))).((((..(((((.((((((((...))))))......)).)))))....))))...............................))).... (-25.44 = -25.12 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:24 2006