Locus 6725

Sequence ID 3R_DroMel_CAF1
Location 17,717,447 – 17,717,541
Length 94
Max. P 0.657537
window10921

overview

Window 1

Location 17,717,447 – 17,717,541
Length 94
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 84.82
Mean single sequence MFE -21.27
Consensus MFE -15.89
Energy contribution -15.57
Covariance contribution -0.31
Combinations/Pair 1.18
Mean z-score -1.62
Structure conservation index 0.75
SVM decision value 0.26
SVM RNA-class probability 0.657537
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17717447 94 + 27905053
CAUUGCGCGAAUACAUCAUCGCUGGCCAAUUCCCAUUCCCACUCCCAUUUCCUGACCUGCGUAUCUUCGCUAGGCUGUUUUGGCCAGGCCAA---CA
......((((........))))(((((...............................(((......)))..((((.....)))).))))).---.. ( -23.10)
>DroSec_CAF1 6704 94 + 1
CAGUGCGCGAAUACCUCAUCGCUGGCCAAUUCCCAUUCCCACUCCCAUUUCCUGACCUACGUAUCUUCGCUAGGCUGUUUUGGCCAGGCCAA---CA
..(.((((((........))))(((((((..(.............((.....)).((((((......)).))))..)..))))))).)))..---.. ( -20.70)
>DroSim_CAF1 6832 94 + 1
CAGUGCGCGAAUACAUCAUCGCUGGCCAAUUCCCAUUCCCACUCCCAUUUCCUGACCUACGUAUCUUCGCUAGGCUGUUUUGGCCAGGCCAA---CA
..(.((((((........))))(((((((..(.............((.....)).((((((......)).))))..)..))))))).)))..---.. ( -20.70)
>DroYak_CAF1 7147 82 + 1
CAU---------------UCGCUGGCUCAUUCGCCUUCCCACUUCCAUUUCCUGACCUACGUAUCUUGGCUGGGCCGUUUUGGCCAGGCCAACAACA
...---------------.....(((......))).........................((...((((((.((((.....)))).))))))..)). ( -20.60)
>consensus
CAGUGCGCGAAUACAUCAUCGCUGGCCAAUUCCCAUUCCCACUCCCAUUUCCUGACCUACGUAUCUUCGCUAGGCUGUUUUGGCCAGGCCAA___CA
.....................((((((((..(.............((.....)).((((.((......))))))..)..)))))))).......... (-15.89 = -15.57 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:23 2006