Locus 6724

Sequence ID 3R_DroMel_CAF1
Location 17,713,310 – 17,713,409
Length 99
Max. P 0.894931
window10920

overview

Window 0

Location 17,713,310 – 17,713,409
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 88.79
Mean single sequence MFE -33.52
Consensus MFE -24.40
Energy contribution -25.08
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -2.43
Structure conservation index 0.73
SVM decision value 0.98
SVM RNA-class probability 0.894931
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17713310 99 - 27905053
AAAAAUGGUAUAAGCUGCAUGCAUCCCAGCGAGUUCUAUAGCGAGUGCCUACUGUAGCAACUAAGUGAUCGGCGGCUUUUGUUGCCGGUUACAAACCGC
......(((....((((((.((((....((..........))..))))....))))))......((((((((((((....))))))))))))..))).. ( -34.70)
>DroSec_CAF1 2717 99 - 1
AAAAACGAUAAAAGCUGCAUGCAGGCCAGUGAGUUCUAUAGCGAGUGUCUACUGUAGCAACUAAGUGAUCGGCGGCUUUUGUUGCCGGUUACAAACCGC
.....(((((((((((((.....(..((.(.((((((((((..........)))))).)))).).))..).))))))))))))).((((.....)))). ( -31.30)
>DroSim_CAF1 2896 99 - 1
AAAAACCAUAACGGCUGCAUGCAUGCCAGUGAGUUCUUUAGCGAGUGUCUACUGUAGCAACUAAGUGAUCGGCGGCUUUUGUUGCCGGUUACAAACCGC
...........(((.....(((.(((.((((..(.(((....))).)..)))))))))).....((((((((((((....))))))))))))...))). ( -30.20)
>DroEre_CAF1 4460 99 - 1
AAAGACGGUAAAAGCUGGCUCUAUGCCAGUGAGUUCUAUAGCGAGUGUCUACUGUAGCAACUAAGUGAUCGGCGGCUUUUGUUGCCUGUUACAAACCGC
.....((((....((((((.....)))))).((((((((((..........)))))).))))..(((((.((((((....)))))).)))))..)))). ( -35.70)
>DroYak_CAF1 2912 99 - 1
CAGGACAGCAAAAGCUGUCUGAAUGCCAGUGGUAUCUAUAGCGAGUGUCUACUGUAGCAACUAAGUGAUCAGCGGCUUUUGUUGCCGGUUACAAACCGC
..((.((((((((((((.((((.(((...((((..((((((..........))))))..)))).))).))))))))))))))))))(((.....))).. ( -35.70)
>consensus
AAAAACGGUAAAAGCUGCAUGCAUGCCAGUGAGUUCUAUAGCGAGUGUCUACUGUAGCAACUAAGUGAUCGGCGGCUUUUGUUGCCGGUUACAAACCGC
.............((((.........)))).((((((((((..........)))))).))))..((((((((((((....))))))))))))....... (-24.40 = -25.08 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:22 2006