Locus 6723

Sequence ID 3R_DroMel_CAF1
Location 17,707,367 – 17,707,477
Length 110
Max. P 0.907491
window10919

overview

Window 9

Location 17,707,367 – 17,707,477
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -30.30
Consensus MFE -19.28
Energy contribution -20.08
Covariance contribution 0.80
Combinations/Pair 1.29
Mean z-score -2.46
Structure conservation index 0.64
SVM decision value 1.05
SVM RNA-class probability 0.907491
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17707367 110 - 27905053
GCAUUGGUAGCACUUCCGGGCUCCAUAUUUUCAAAGAUCCCGGAUAUAUUAUUUUUCUUUAUAGCUCUCAAUGAGGCUCUGCUAUCUGUUACUAGUAGAGCAUCCUGCUU
.(((((..(((...((((((.((............)).))))))((((...........)))))))..)))))..(((((((((........)))))))))......... ( -32.90)
>DroSec_CAF1 3413 110 - 1
GCAUUGGCAGCACUUCCGGGCUCCAUAUUUUCAAAGAUCCCGGAUAUAUUGUUUUUCUUUAUAGCUCUCAAUGAGGCUCUACUAUCUGUUACUAGUAGAGCAUCCUGCUU
.((((((.(((...((((((.((............)).))))))((((..(.....)..))))))).))))))..(((((((((........)))))))))......... ( -34.10)
>DroEre_CAF1 3495 110 - 1
GCAUUGGUAGCACUUCCGGGCUCCACAUUUUCAAAGAUGCCGGAUAGAUCAUUUUUCUUUAUAGCUCUCAAUGAUGCUCUACUAUCUGUUACUAGAAGAGCAUCCUGCUU
((((((..(((...(((((......(((((....)))))))))).(((.......))).....)))..))))((((((((.(((........))).))))))))..)).. ( -29.00)
>DroYak_CAF1 3393 110 - 1
GCAUUGGUGGCACUUCCGGGCUCCACAUUUUCAAAGAUCCCGGAUAGAUCAUUCUUCUUUAUAGCUCUCAAUGAGGCUCUGCUAUCUGUUACCAGAAGAGCAUCCUGCUU
.(((((..(((...((((((.((............)).)))))).(((....)))........)))..)))))((((..((((.((((....))))..))))....)))) ( -30.10)
>DroAna_CAF1 3543 110 - 1
GCGAUGACCGCACUGCCAGGUUCCAUAUUCUCAAAGAGUCCUGUCAGAUCGUUGUUGGAGAUGGCUUUCAGCGAAGCUCUACUUUCCGUUACUAAAUGACUAUCGUGCAA
((((((......(((.(((((((............))).)))).))).(((((..((((((.((((((....))))))....))))))......))))).)))))).... ( -25.40)
>consensus
GCAUUGGUAGCACUUCCGGGCUCCAUAUUUUCAAAGAUCCCGGAUAGAUCAUUUUUCUUUAUAGCUCUCAAUGAGGCUCUACUAUCUGUUACUAGAAGAGCAUCCUGCUU
.((((((.(((...((((((.((............)).)))))).....(((........)))))).))))))..(((((.(((........))).)))))......... (-19.28 = -20.08 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:21 2006