| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,701,578 – 17,701,683 |
| Length | 105 |
| Max. P | 0.892815 |
| Location | 17,701,578 – 17,701,683 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 73.04 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -7.77 |
| Energy contribution | -9.77 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17701578 105 + 27905053 CUAAA--CUUUAAAUUCUUUCUCUUAACUCAAAACGUAUAAGUGAUAACACAUCAAUUUUCAAUAGGGCUGAUCAAAACUGACACGCCCAUUCUUUUGGAAAUU-UAA .....--............((.((((((.......)).)))).)).........(((((((((..((((((.(((....))))).))))......)))))))))-... ( -15.50) >DroSec_CAF1 10563 93 + 1 CUG--------------UUUCACUUAACUCAAAACGUAUAAGUGAUAAAACAUCAAAUUGCAAUCGGGCUAAUAUAAACUGUCACGCCCACAAC-AAACAAAUUGAAA .((--------------(((((((((((.......)).)))))))...))))((((.(((.....((((................)))).....-...))).)))).. ( -14.41) >DroSim_CAF1 10743 103 + 1 CUAAAAUCCUUAAACU-GUUCACUU-ACUCAAAACGCAUAAGUGAUAAAACAGCAAA-UGCAAUCGGGAUGAUAUAAACUGUCACGCCCACAAC-AAACAAAUA-UAA ..............((-((((((((-(..(.....)..)))))))....))))....-.......(((.(((((.....)))))..))).....-.........-... ( -15.70) >consensus CUAAA__C_UUAAA_U_UUUCACUUAACUCAAAACGUAUAAGUGAUAAAACAUCAAAUUGCAAUCGGGCUGAUAUAAACUGUCACGCCCACAAC_AAACAAAUU_UAA ...................(((((((............)))))))....................(((((((((.....))))).))))................... ( -7.77 = -9.77 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:20 2006