Locus 6721

Sequence ID 3R_DroMel_CAF1
Location 17,693,274 – 17,693,376
Length 102
Max. P 0.500000
window10917

overview

Window 7

Location 17,693,274 – 17,693,376
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.24
Mean single sequence MFE -38.33
Consensus MFE -25.70
Energy contribution -26.98
Covariance contribution 1.28
Combinations/Pair 1.47
Mean z-score -1.31
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17693274 102 + 27905053
AAAGCCUUGUUGCUGAGUUGAAGGCGAUGCUUGAGCUCCUGGUAAUCGCCGCUAACCAAGAUGCUCCUGCAUUUGGCCAAUUCGAUGUCCAGCCGGCGGUUC
...(((.....((((.((((((((((((((..((((((.((((...........)))).)).))))..)))))..)))..))))))...)))).)))..... ( -33.80)
>DroSec_CAF1 2260 102 + 1
AAAGCCUUGUUGCUCAGUUGAAGGCGAUGCUUGAGCUCCUGGUAAUCGCUGCCAGCCAGGAUGCUCCUGCAUUUGGCCAACUCGCUGUCCAGCCGGCGGUUU
...(((..((((..((((.(..((((((((..(((((((((((...........))))))).))))..)))))..)))..)..))))..)))).)))..... ( -41.70)
>DroSim_CAF1 2265 102 + 1
AAAGCCUUGUUGCUCAGUUGAAGGCGGUGCUUGAGCUCCUGGUAAUCGCCGCCAGCCAGGAUGCUCCUGCAUUUGGCCAACUCGCUGUCCAGCCGGCGGUUU
...(((..((((..((((.(..((((((((..(((((((((((...........))))))).))))..)))))..)))..)..))))..)))).)))..... ( -41.20)
>DroEre_CAF1 2313 102 + 1
AAUGCAUUAUUGCUCAGCAGAAGGCGGUGUUUGAGCUCCUGGUAAUCGCCGCGAGCCAGAAUGCUCUUGCACUUGGCCAACUCGUGGUCCAGCCGGCGGUUC
...(((....)))...((....((((((((..((((..(((((..(((...))))))))...))))..)))))((((((.....))).)))))).))..... ( -36.10)
>DroYak_CAF1 2273 102 + 1
AGGGCAUUGUUGCUCAGUAGAAGGCGAUGCUUGAGCUCCUGGUAAUCGCCGCGCGCUAGGAUGCUCUUGCACUUGGCCAACUCGGUGUCCAGCCGGCGGUUC
.((((((((((..((....)).))))))))))(((((.(((((...(((((.(.((((((.(((....)))))))))...).)))))....))))).))))) ( -41.10)
>DroAna_CAF1 2377 102 + 1
AGCGCUUCGUUGGUCAACUGCAACUGAUGCUUGAGCUCCUUGUAGUCGCGGGCGGCAUAUGUGCUCUUGUAUCGGCCCAGCUCCUCGGCCAGCCGCUGGUUC
((((....(((((((....((..(((((((..((((.(..(((.((((....))))))).).))))..)))))))....)).....)))))))))))..... ( -36.10)
>consensus
AAAGCCUUGUUGCUCAGUUGAAGGCGAUGCUUGAGCUCCUGGUAAUCGCCGCCAGCCAGGAUGCUCCUGCAUUUGGCCAACUCGCUGUCCAGCCGGCGGUUC
...(((..((((..((((....((((((((..(((((((((((...........))))))).))))..)))))..))).....))))..)))).)))..... (-25.70 = -26.98 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:19 2006