Locus 6720

Sequence ID 3R_DroMel_CAF1
Location 17,682,260 – 17,682,363
Length 103
Max. P 0.589665
window10916

overview

Window 6

Location 17,682,260 – 17,682,363
Length 103
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 85.62
Mean single sequence MFE -28.07
Consensus MFE -22.89
Energy contribution -23.01
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.72
Structure conservation index 0.82
SVM decision value 0.11
SVM RNA-class probability 0.589665
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17682260 103 + 27905053
UAUUUCCAUAAA-AAUUGUUUCCUAGCACCGCU--AUUGCACUUUUAACUGCAGCAGUUUUGAGAGGUGGCGCGAGUAGGGAACAUCUCUGGCUACUGAGAUGACG
............-....(((((((..((((((.--...)).(((..(((((...)))))..))).))))((....)))))))))(((((........))))).... ( -29.60)
>DroSec_CAF1 76580 95 + 1
UAUUUACAUAAAAAAUUGUUUCCUAGCACCGCUCUCUUGCACUGUUAACUGCAGCAGUUUUGAAAGGUGGCGCAAGUAGGGAACAUC-----------AGCUGAAG
................((((((((..((((((......))((((((......)))))).......))))((....))))))))))..-----------........ ( -24.90)
>DroSim_CAF1 81077 94 + 1
UAUUUACAUAAA-AAUUGUUUCCUAGCACCGCUCUCUUGCACUGUUAACUGCAGCGGUUUUGAGAGGUGGCGCAAGUAGGGAACAUC-----------AGCUGACG
............-...(((((((((((.((((.(((((..((((((......))))))...))))))))).))...)))))))))..-----------........ ( -29.70)
>consensus
UAUUUACAUAAA_AAUUGUUUCCUAGCACCGCUCUCUUGCACUGUUAACUGCAGCAGUUUUGAGAGGUGGCGCAAGUAGGGAACAUC___________AGCUGACG
................(((((((((((.(((((.......((((((......)))))).......))))).))...)))))))))..................... (-22.89 = -23.01 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:18 2006