Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,439,527 – 2,439,647 |
Length | 120 |
Max. P | 0.553780 |
Location | 2,439,527 – 2,439,647 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -35.20 |
Energy contribution | -35.87 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.82 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2439527 120 + 27905053 GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCACAACCACAACUUCUGGGCCAACGUCGAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGAGUGGG .((.(((((((.............(((....)))...........((((..(((((((((((((((((.((....)).))))))..))))).)))))).)))).))))))).))...... ( -43.80) >DroSec_CAF1 5949 114 + 1 GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCA------CAACUUCUGGGGCAACGUCGAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGCGUGGG (((.(((((((.............(((....))).....(((------(..((((((..(((((((((.((....)).)))))))...))..)))))).)))).))))))).)))..... ( -45.00) >DroSim_CAF1 6072 114 + 1 GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCA------CAACUUCUGGGGCAACGUCAAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGAGUGGG .((.(((((((.............(((....))).....(((------(..((((((.(....).....((((..((((...))))..)))))))))).)))).))))))).))...... ( -39.90) >consensus GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCA______CAACUUCUGGGGCAACGUCGAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGAGUGGG .((.(((((((.............(((....)))..((((...........((((((..(((((((((.((....)).))))))))).....)))))).)))).))))))).))...... (-35.20 = -35.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:57 2006