| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,672,469 – 17,672,581 |
| Length | 112 |
| Max. P | 0.553031 |
| Location | 17,672,469 – 17,672,581 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 85.09 |
| Mean single sequence MFE | -29.01 |
| Consensus MFE | -18.54 |
| Energy contribution | -20.43 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17672469 112 + 27905053 UUUCUGCUGACGGGUUUGGGUGUUUAUGUCUGCGACAGGUGAUGGAUUGGAGUGGAAGGAAAACAAUCCAAUCUAUUUGGCAAAAA---AAAAAACAACCAAAUGCUGGUAAAUA ....((((...(.((((((.(((((.((((...)))).(((((((((((((.((.........)).)))))))))))..)).....---...))))).)))))).).)))).... ( -29.20) >DroSim_CAF1 68476 115 + 1 UUUUUGCUGACGGGCUUGGGUGUUUAUGUCUGCGACAGGUGAUGGAUUGGAGUGGAAGGAAAACAAUCCAAUCUAUUUGGCAAAAAGAUAAAAAACAACCAAAUGCUGGUAAAUA .........((.(((((((.(((((.(((((.........(((((((((((.((.........)).)))))))))))........)))))..))))).))))..))).))..... ( -31.23) >DroYak_CAF1 74913 106 + 1 AUUGUGUUGACAGGUUGGCGUGUUUAUCUCUGCGACAGGUGAUGGAUUGGA----AAGGAAAACAAUCCAAUCUAUUUGACGAAUA---UAAAA-AAACC-AAUGCUGCUUAACA ....((((((((((((((....(((((.....((.((((((((((((((..----........)))))).))).))))).))...)---)))).-...))-))).))).)))))) ( -26.60) >consensus UUUCUGCUGACGGGUUUGGGUGUUUAUGUCUGCGACAGGUGAUGGAUUGGAGUGGAAGGAAAACAAUCCAAUCUAUUUGGCAAAAA___AAAAAACAACCAAAUGCUGGUAAAUA ..........(((((((((.(((((....(((...)))(((((((((((((.((.........)).)))))))))))..))...........))))).)))))).)))....... (-18.54 = -20.43 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:15 2006