| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,663,346 – 17,663,446 |
| Length | 100 |
| Max. P | 0.577970 |
| Location | 17,663,346 – 17,663,446 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.44 |
| Mean single sequence MFE | -32.18 |
| Consensus MFE | -20.41 |
| Energy contribution | -19.63 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17663346 100 - 27905053 ---UUGGCUUUGGCUAGCUUU-UUGAUUUGGCCGAGACGUGUGGCAAGCCCAGCGCUCAAGCUCAAAACUGGUUUGU--GAUUUCAGAUUUGGGAGUUGCAAAAAG ---(((((((.((((((....-.....))))))(((.(((..((....))..)))))))))).)))..((..((((.--.(((((.......)))))..)))).)) ( -28.30) >DroSec_CAF1 58664 100 - 1 ---UUGGCUUUGGCCAGCUUU-UUGAUUUGGCCGAGACGUGUGGCAAACCCAGCGCUCAAGCUCAAAACUGGUUUGU--GAUUUCAGAUUUGGGAGCUGCAAAAUG ---...((...((((((....-.....))))))(((.(((.(((.....))))))))).(((((....(..(((((.--.....)))))..).)))))))...... ( -28.50) >DroSim_CAF1 59108 100 - 1 ---UUGGCUUUGGCCAGCUUU-UUGAUUUGGCCGAGACGUGUGGCAAACCCAGCGCUGAAGCUCAAAACUGGUUUGU--GAUUUCAGAUUUGGGAGCUGCAAAAUG ---...(..((((((((....-.....))))))))..).((..((...(((((..(((((((.((((.....)))).--).))))))..))))).))..))..... ( -31.80) >DroYak_CAF1 64656 94 - 1 ---UUGGCUUUGGCCAGCUUU-UUGAUUUGGCCGAGACGUGUGGCAAGCCCAGCUC------UCAAAACUGGUUUGU--GAUUUCAGAUUUGGGAGCUGCAAAAUG ---..((((...((((((.((-(((.......))))).)).)))).))))((((((------(((((.((((.....--....)))).)))))))))))....... ( -34.10) >DroMoj_CAF1 58226 90 - 1 ---UUGGCUUGAGCCAGCUUU-UUGAUUUGGCCGAGACGUGUGGCAAGCUUGC----CAAGUUUGGAACAGGUUU-U--GAUUUCAGAUUUUGAAGCUA--UU--- ---..(((....)))((((((-..(((((((.((((((.(((..((((((...----..))))))..))).))))-)--)...)))))))..)))))).--..--- ( -32.50) >DroAna_CAF1 64978 102 - 1 GCUUUGGCUUUGGCCAGCUUUUUUGAUUUGGCCGAGACGUGUGGCAAGCCCAGGUCUCGUCUCGGAAACAGGUUUCUCCGAUUUCAGAUUUGGGAGCUGCAA---- ((....))(((((((((.((....)).)))))))))...((..((...(((((((((.(..(((((..........)))))..).))))))))).))..)).---- ( -37.90) >consensus ___UUGGCUUUGGCCAGCUUU_UUGAUUUGGCCGAGACGUGUGGCAAGCCCAGCGCUCAAGCUCAAAACUGGUUUGU__GAUUUCAGAUUUGGGAGCUGCAAAAUG .....(((....)))((((((...((((((((((.......))))(((((....................))))).........))))))..))))))........ (-20.41 = -19.63 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:14 2006