Locus 6716

Sequence ID 3R_DroMel_CAF1
Location 17,661,778 – 17,661,873
Length 95
Max. P 0.807298
window10911

overview

Window 1

Location 17,661,778 – 17,661,873
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 80.35
Mean single sequence MFE -23.68
Consensus MFE -15.38
Energy contribution -16.60
Covariance contribution 1.22
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.65
SVM decision value 0.64
SVM RNA-class probability 0.807298
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17661778 95 - 27905053
UGUACGAUCUCAAAAGUAUAGUACGGGGCCAGUCGUGGUCACUCCCCCGCAACUCUGUC-CCGAUAUAUCUCUAUCUUCGAGAUACAAAAACACAA
(((((..........)))))...((((((.(((.((((........)))).)))..)))-)))...((((((.......))))))........... ( -24.40)
>DroSim_CAF1 57580 79 - 1
--------------AGUGUAGUACAGUGCCAGUCGGGGUCACUCCCCCGCAACUCUGCC-CCGAUAUAUCUCUAUCUUCGAGAUACAA--ACACAA
--------------.((((............((((((((.................)))-))))).((((((.......))))))...--)))).. ( -21.43)
>DroEre_CAF1 58759 92 - 1
UGUAUGAUCUCAGAAGUGUAGUACGGGGCCAGUCGGGGUCACUCCCCCGCAACUCAGCAGCCGA--UAUCUCUAUCCUCGAGAUACAA--ACACAA
...............((((....(((.((.((((((((......)))))..)))..))..))).--((((((.......))))))...--)))).. ( -25.20)
>consensus
UGUA_GAUCUCA_AAGUGUAGUACGGGGCCAGUCGGGGUCACUCCCCCGCAACUCUGCC_CCGAUAUAUCUCUAUCUUCGAGAUACAA__ACACAA
...............((((....(((((...(.(((((......))))))..))))).........((((((.......)))))).....)))).. (-15.38 = -16.60 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:13 2006