Locus 6715

Sequence ID 3R_DroMel_CAF1
Location 17,659,876 – 17,659,968
Length 92
Max. P 0.582505
window10910

overview

Window 0

Location 17,659,876 – 17,659,968
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 91.25
Mean single sequence MFE -22.63
Consensus MFE -18.26
Energy contribution -18.27
Covariance contribution 0.00
Combinations/Pair 1.23
Mean z-score -2.13
Structure conservation index 0.81
SVM decision value 0.10
SVM RNA-class probability 0.582505
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17659876 92 + 27905053
ACCGC-CCUGAGUUCAUUAUCGUUCAUUAUGU----CCCAUGCCACAAGACAUUCUGAUACAAUUUUCGGACUGCCUCCGCGAUGAACUUGUUAAAC
.....-...(((((((((...(((((..((((----(...........)))))..))).))......((((.....)))).)))))))))....... ( -19.30)
>DroSec_CAF1 55119 92 + 1
ACCGC-CCUGAGUUCAUUAUCGUUCAUUAUGU----CCCAUGCCACAAGACAUUCUGAUACAAUUUUCAGAGUGCCUCCGAGAUGAGCUCGUUAAAC
.....-...(((((((((.(((.......(((----........)))((.((((((((........)))))))).)).))))))))))))....... ( -23.70)
>DroSim_CAF1 55497 92 + 1
ACCGC-CCUGAGUUCAUUAUCGUUCAUUAUGU----CCCUUGCCACAAGACAUUCUGAUACAAUUUUCGGAGUGCCUCCGAGAUGAGCUCGUUAAAC
.....-...(((((((((...(((((..((((----(...........)))))..))).)).....((((((...)))))))))))))))....... ( -25.90)
>DroEre_CAF1 56299 92 + 1
ACCAU-CCUGAGUUCAUUAUCGUUCAUUACGU----CCCAUGCCACAAGAAAUUCUGAUACAAUUUUCGGAGUGCCUGCGAGAUGAGCUCGUUAAAC
.....-...(((((((((.((((.......((----........)).((..(((((((........)))))))..)))))))))))))))....... ( -21.80)
>DroYak_CAF1 60782 93 + 1
ACCGCCCCUGAGUUCAUUAUCGUUCAUUAUGU----CCCCUGCCACAAGACAUUCUGAUACAAUUUUCGGAGUGCCUCCGAGAUGAGCUCGUUAAAC
.........(((((((((...(((((..((((----(...........)))))..))).)).....((((((...)))))))))))))))....... ( -25.90)
>DroAna_CAF1 61778 96 + 1
ACCUC-CCAAAGUUCAUUAUCGUUCAUUAUACCUUCCUCAUGCCACAAGACAUUCUGGUACAAUUUUCGGAGUGCCUCCGAGAUGAGCUCGUUAAGC
.....-....((((((((......................(((((.((....)).)))))......((((((...))))))))))))))........ ( -19.20)
>consensus
ACCGC_CCUGAGUUCAUUAUCGUUCAUUAUGU____CCCAUGCCACAAGACAUUCUGAUACAAUUUUCGGAGUGCCUCCGAGAUGAGCUCGUUAAAC
.........(((((((((..(((.....)))................((.((((((((........)))))))).))....)))))))))....... (-18.26 = -18.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:12 2006