Locus 6714

Sequence ID 3R_DroMel_CAF1
Location 17,655,022 – 17,655,112
Length 90
Max. P 0.612175
window10909

overview

Window 9

Location 17,655,022 – 17,655,112
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 91.85
Mean single sequence MFE -28.07
Consensus MFE -25.89
Energy contribution -26.00
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.92
SVM decision value 0.16
SVM RNA-class probability 0.612175
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17655022 90 - 27905053
CAAAAAAAAGAGCAUCACAUGGAUUUUUAUGUUGAUGUUCGAUGGGCGGCGGCCGGCGGCUUAGGCUGGGGCAGAGGGUGCGACGGUGAA
.........(((((((((((((....))))).))))))))..(((((.((.....)).))))).((((..(((.....)))..))))... ( -28.90)
>DroSec_CAF1 50240 87 - 1
---AAAAAAGAGCAUCACAUGGAUUUUUAUGUUGAUGUUCGAUGGGCGGCGGCUGGCGGCUUAAGCUUGGGCAAGGGGUGCGGCGGGGGA
---......(((((((((((((....))))).)))))))).....((.(((.((....(((((....)))))...)).))).))...... ( -26.70)
>DroSim_CAF1 50660 90 - 1
CAAAAAAAAGAGCAUCACAUGGAUUUUUAUGUUGAUGUUCGAUGGGCGGCGGCCGGCGGCUUAAGCUUGGGCAAGGGGUGCGGCGGGGGA
.........(((((((((((((....))))).)))))))).....((.(((.((....(((((....)))))...)).))).))...... ( -28.60)
>consensus
CAAAAAAAAGAGCAUCACAUGGAUUUUUAUGUUGAUGUUCGAUGGGCGGCGGCCGGCGGCUUAAGCUUGGGCAAGGGGUGCGGCGGGGGA
.........(((((((((((((....))))).)))))))).....((.(((.((.(((((....)))...))...)).))).))...... (-25.89 = -26.00 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:11 2006