Locus 6712

Sequence ID 3R_DroMel_CAF1
Location 17,653,362 – 17,653,462
Length 100
Max. P 0.857362
window10907

overview

Window 7

Location 17,653,362 – 17,653,462
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 77.07
Mean single sequence MFE -25.24
Consensus MFE -13.48
Energy contribution -13.40
Covariance contribution -0.08
Combinations/Pair 1.24
Mean z-score -2.02
Structure conservation index 0.53
SVM decision value 0.81
SVM RNA-class probability 0.857362
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17653362 100 - 27905053
GUACCUGGUACUUGCACAUUUCACGGGGUAUAUUGUAUUUCAGCAGACUGACAUCUGGUUUGCUUUUUUUUCUAUAUGUAAGAUCAUGUAUUUGUAUGGU
((((.((((.((((((........(..((((...))))..)((((((((.......))))))))............)))))))))).))))......... ( -23.20)
>DroSec_CAF1 48336 93 - 1
GUACCUGGUACUUGCACAUUUCAAGGGGUAUAUUGUAUUUCAGCAGACUGACAUCUGGUUUGCUUU--UUUCUAUAUGUA-----AUGUACUUGUAUGGU
((((..((((((((((........(..((((...))))..)((((((((.......))))))))..--........))))-----).))))).))))... ( -23.10)
>DroSim_CAF1 48197 81 - 1
GUACCUGGUACUUGC-------AAGGGGUAUAUUGUAUUUCAGCAGACUGUCAUCUGGUUUGCUUU--UUUCUAUAUGUA-----AUGUACUUGU-----
......(((((((((-------(.(..((((...))))..)((((((((.......))))))))..--........))))-----).)))))...----- ( -20.20)
>DroEre_CAF1 49693 98 - 1
AUACCCAGUGCUUGCGCUUUUCAAGGGGUAUAUUGUAUUUCAGCAGACUGACACUUGUCUUGCCUU--UGACCACAGGUAAGAUCAUGUACCUGGAUGGU
....((((((....)))).......((((((((......((((....)))).....(((((((((.--.......))))))))).))))))))))..... ( -25.10)
>DroYak_CAF1 53969 92 - 1
GUACCUGGCACUUGCACGCAUCAAGGGGUAUAUUGUAUUUCAGCAGAGUGACAUCUGCUAUGCUUU--UGACCACAUGUAAG------UGCUGGGUUGGU
..(((..(((((((((.(..(((((..((((...))))..)((((((......))))))......)--)))...).))))))------)))..))).... ( -34.60)
>consensus
GUACCUGGUACUUGCACAUUUCAAGGGGUAUAUUGUAUUUCAGCAGACUGACAUCUGGUUUGCUUU__UUUCUAUAUGUAAG___AUGUACUUGUAUGGU
....(..((((.............(..((((...))))..).(((((((.......)))))))........................))))..)...... (-13.48 = -13.40 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:09 2006