Locus 6711

Sequence ID 3R_DroMel_CAF1
Location 17,648,394 – 17,648,488
Length 94
Max. P 0.650453
window10906

overview

Window 6

Location 17,648,394 – 17,648,488
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 89.72
Mean single sequence MFE -35.32
Consensus MFE -26.66
Energy contribution -27.66
Covariance contribution 1.00
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.75
SVM decision value 0.24
SVM RNA-class probability 0.650453
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17648394 94 + 27905053
CGGUUCGCCGCGAACUAGAAUUC-CAGGGCUGCAGGUGCAUUGCUGGAUUGGUUCGGAACUUGGAGUCGGUUCACGGCUCUCCCAUUGAAAAUUG
(((....)))((((((((...((-(((.(.(((....))).).)))))))))))))......(((((((.....))))))).............. ( -32.10)
>DroSec_CAF1 43343 94 + 1
CGGUUCGCCGGGAACUAGAACUC-CAGGGCUGCAGGUGCACUGCUGGAUUGGUUCGGAACUUGGAGUCGGUUCGCGGCGCUCCAAUUAAAAAUUG
.((..(((((.(((((.((.(((-((((...((((.....))))..((.....))....)))))))))))))).)))))..))............ ( -39.20)
>DroSim_CAF1 43195 94 + 1
CGGUUCGCCGGGAACUAGAACUC-CAGGGCUGCAGGUGCACUGCUCGAUUGGUUCGGAACUUGGAGUCGGUUCGCGGGGCUCGAAUUAAAAAUUG
.(((((((((.(((((.((.(((-((((...((((.....))))((((.....))))..)))))))))))))).)))....))))))........ ( -35.50)
>DroEre_CAF1 45014 94 + 1
CGGUUCGCCGGGAACUAGAACUC-CAGGGCUGCAGGCGCACUGUUCGAUUGGUUCGGAACUUGGAGUUGGUUCUCGGCGCUCCAAUUAAUAAAUG
.((..((((((((((((..((((-((((...((((.....))))((((.....))))..))))))))))))))))))))..))............ ( -42.50)
>DroYak_CAF1 48842 95 + 1
CGGUUCGCCGCGAACUAGAACUCCCAGGGCUGCAGGUGCACUGCUCGAUUGGUUCGGAACUUGGAGUUGGCUCAGAGUGCUCCAAUUAAAUGUUG
.((((((...)))))).(((((....(((((((....)))..))))....)))))(((((((.(((....))).))))..)))............ ( -27.30)
>consensus
CGGUUCGCCGGGAACUAGAACUC_CAGGGCUGCAGGUGCACUGCUCGAUUGGUUCGGAACUUGGAGUCGGUUCACGGCGCUCCAAUUAAAAAUUG
.((..(((((.(((((...((((.((((...((((.....))))((((.....))))..)))))))).))))).)))))..))............ (-26.66 = -27.66 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:08 2006