| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,439,055 – 2,439,175 |
| Length | 120 |
| Max. P | 0.769000 |
| Location | 2,439,055 – 2,439,175 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.17 |
| Mean single sequence MFE | -27.76 |
| Consensus MFE | -24.46 |
| Energy contribution | -24.66 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2439055 120 + 27905053 UGCACUGUUUGCAAUUCCCCCGGCAAUGCGCAAACGAAAUUUAAUUAAAAUUUAAGCCCUGAGAGGGCAGAGCUUUGUCUGCAUAUUGCAAACGCUUCAGUAAUAAUUACGGCAAAUCAA (((...(((((((((....(.(((((.((.(.....((((((.....))))))..((((.....)))).).)).))))).)...)))))))))......(((.....))).)))...... ( -30.10) >DroSec_CAF1 5480 117 + 1 ---ACUGUUUGCAAUUCCCCCGGCAAUGCGCAAUCGAAAUUUAAUUAAAAUUUAAGCCCUGAGAGGGCGGAGCUUUGUCUGAAUAUUGCAAACGCUUCAGUAAUAAUUACGGCAAAUCAA ---...(((((((((....(.(((((.((.......((((((.....))))))..((((.....))))...)).))))).)...)))))))))(((...(((.....))))))....... ( -29.00) >DroSim_CAF1 5602 120 + 1 UGCACUGUUUGCAAUUCCCCCGGCAAUGCGCAAUCGAAAUUUAAUUAAAAUUUAAGCCCUGAGAGGGCGGAGCUUUGUCUGAAUAUUGCAAACGCUUCAGUAAUAAUUACGGCAAAUCAA (((...(((((((((....(.(((((.((.......((((((.....))))))..((((.....))))...)).))))).)...)))))))))......(((.....))).)))...... ( -30.00) >DroEre_CAF1 5531 120 + 1 UGCACUGUUUGCAAUUCCCCCGGCAAUGCGCAAUCGAAAUUUAAUUAAAAUUUAAGCCCUGAGAGGACGGCGCCUUGACUGAAUAUUGCAAACGCUUCAAUAAUAAUUAAGGCAAAUCAA ......(((((((((.....((((((.((((.....((((((.....)))))).....((....))...)))).))).)))...)))))))))((((.(((....))).))))....... ( -28.00) >DroYak_CAF1 5145 120 + 1 UGCAUUGUUUGCAAUUCCCCCGGCAAUGCGCAAUCGAAAUUUAAUUAAAAUGUAAGCCCUGAGAGUGCAGAGCUUUGACUGAAUAUUGCAAGCGCUUCAAUAAUAAUUACGGCAAAUCAA ......(((((((((((....(((..(((((..(((...((((.........))))...)))..)))))..)))......))..)))))))))(((..(((....)))..)))....... ( -21.70) >consensus UGCACUGUUUGCAAUUCCCCCGGCAAUGCGCAAUCGAAAUUUAAUUAAAAUUUAAGCCCUGAGAGGGCGGAGCUUUGUCUGAAUAUUGCAAACGCUUCAGUAAUAAUUACGGCAAAUCAA ......(((((((((.....((((((.((.......((((((.....))))))..((((.....))))...)).))).)))...)))))))))(((..(((....)))..)))....... (-24.46 = -24.66 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:56 2006