Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,642,236 – 17,642,349 |
Length | 113 |
Max. P | 0.521084 |
Location | 17,642,236 – 17,642,349 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -23.38 |
Consensus MFE | -16.05 |
Energy contribution | -16.55 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.06 |
Mean z-score | -1.53 |
Structure conservation index | 0.69 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17642236 113 - 27905053 UGCUGUAGAGAAUGUUUUAUUAUGAACUUAUGUCUGCAGAAGGAAUUUUAAGAUUGUUAUUUUGAAAUACAUAUUUUUUUAAGUGUACACACAUAUAGCAGCUAAUGCAACCA ..(((((((.(..((((......))))...).)))))))..((.((((((((((....))))))))))..............(((....))).....(((.....)))..)). ( -23.40) >DroSec_CAF1 37048 112 - 1 UGCUGUAGAGAAUGUUUUAUUAUGAACUUGUGUCUGCACAAGGAAUUGUCUGAUUGUUAUUUUGAAAUAUAUA-UUUUUUAAGUGUAAGCACAUAUAGCAGCUAAUGCAACCA (((((((....((((((((..((((.((((((....)))))).((((....)))).))))..))))))))...-........(((....))).)))))))((....))..... ( -25.50) >DroSim_CAF1 36874 108 - 1 UGCUGUAGAGAAUGUUUUAUUAUGAACUUGUGUCUGCACAAGG---UUUGUGAUUGUUAAUUUGAUAUAUAU--UUUUUUAAGUGUAAGCACAUAUAGCAGCUAAUGCAACCA (((((((..((((.....((((..((((((((....))))).)---))..)))).....)))).........--........(((....))).)))))))((....))..... ( -25.00) >DroYak_CAF1 42235 101 - 1 UGCUCUAGAGAAAGUUUUAGUAUGAACUUAUGCGUAAAUAAGA--------AACUGUUGGUUUACCAUAU----UUGUUUAAGUGUAAGCACAUAUAGCAGCUAAUGCAACCA ((((((((((....))))))((((..(((((((.((((((((.--------......(((....)))..)----))))))).)))))))..)))).))))((....))..... ( -19.60) >consensus UGCUGUAGAGAAUGUUUUAUUAUGAACUUAUGUCUGCACAAGG___UUU_UGAUUGUUAUUUUGAAAUAUAU__UUUUUUAAGUGUAAGCACAUAUAGCAGCUAAUGCAACCA (((((((...................((((((....))))))........................................(((....))).)))))))((....))..... (-16.05 = -16.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:06 2006