Locus 6706

Sequence ID 3R_DroMel_CAF1
Location 17,640,016 – 17,640,107
Length 91
Max. P 0.891338
window10899

overview

Window 9

Location 17,640,016 – 17,640,107
Length 91
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 77.88
Mean single sequence MFE -31.18
Consensus MFE -22.13
Energy contribution -23.41
Covariance contribution 1.28
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.71
SVM decision value 0.97
SVM RNA-class probability 0.891338
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17640016 91 + 27905053
CAACUUGGCCAACAGUGAUGGCAUAUGGCCGUGGAAUUU-UUCAACUGACUCUGCGGUUAGGUACUGGCCCUGCUAGUUUUAGUACCGCAGC----------
...(.((((((.((....)).....)))))).)......-...........(((((((.....((((((...))))))......))))))).---------- ( -27.70)
>DroSec_CAF1 34829 91 + 1
CAACUUGGCCAACAGUGUUGGCAUAUGGCCGUGGAAUUU-UUCAACUGCCACUGCGGUUAGGUACUGGGCCUGCAUUUUCCAGUACCGCAGU----------
.......((((((...))))))....(((.((.((....-.)).)).)))((((((((.....((((((.........))))))))))))))---------- ( -31.60)
>DroSim_CAF1 34655 91 + 1
CAACUUGGCCAACAGUGUUGGCAUAUGGCCGUGGAAUUU-UUCAACUGCCACUGCGGUUAGGUACUGGGCCUGCAAGUUCCAGUACCGCGGU----------
.......((((((...)))))).....(((((.......-...((((((....)))))).((((((((..(.....)..)))))))))))))---------- ( -36.10)
>DroEre_CAF1 36707 94 + 1
CAACUUGGCCAACAGUGUUGGCACAUGGCCGGGGUAUUU-UUCAACUGAAUCCGUGGCUAGGUACUUGGCUGGCCAGUUCCAGUGC-------ACCACAUAA
(((((((.....))).))))((((.((((((.((.((((-.......)))))).))))))((.(((.((....))))).)).))))-------......... ( -30.70)
>DroYak_CAF1 39770 102 + 1
CAACUUGGCCAACAGUGUUGGCAUAUGGCCGGGAAAUUCAUUCAACUCACACUGCAGCUAGGUACUUGCCACGCCAGUUGCAGUACCUCAGUUACCACAUGA
...((((((((...(((....))).))))))))..........((((...(((((((((.(((.........)))))))))))).....))))......... ( -29.80)
>consensus
CAACUUGGCCAACAGUGUUGGCAUAUGGCCGUGGAAUUU_UUCAACUGACACUGCGGUUAGGUACUGGGCCUGCAAGUUCCAGUACCGCAGU__________
.......((((((...))))))...(((((((((.................)))))))))(((((((((.........)))))))))............... (-22.13 = -23.41 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:02 2006