Locus 6703

Sequence ID 3R_DroMel_CAF1
Location 17,635,726 – 17,635,843
Length 117
Max. P 0.607334
window10894

overview

Window 4

Location 17,635,726 – 17,635,843
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 96.15
Mean single sequence MFE -30.45
Consensus MFE -27.04
Energy contribution -27.22
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.89
SVM decision value 0.15
SVM RNA-class probability 0.607334
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17635726 117 + 27905053
AGACAUGACAUGGUGAAUUCAGAUUUUACCGUGUAUUAAAACGUGAUGCGUACGAAAAUGGUGAGUAAUAUUCGACUAUAUUUCGGUGGCGCAUAGGAAGAGCAAUGUGUACAGUGU
..((((.((((((((((.......))))))))))...........((((((.((((((((((((((...)))).))))).)))))...))))))............))))....... ( -31.20)
>DroSec_CAF1 30604 117 + 1
AGACAUGACAUGGUGAAUUCUGAUUUUACCGUGUAUUAAAACGUGAUGCGUACGAAAAUGGUGGGUAAUAUUCGACUAUAUUUCGGUGGCGCAUAGGAAGAGCAAUGUGUACAGUGU
..((((.((((((((((.......))))))))))...........((((((.((((((((((.((......)).))))).)))))...))))))............))))....... ( -32.90)
>DroSim_CAF1 30414 117 + 1
AGACAUGACAUGGUGAAUUCUGAUUUUACCGUGUAUUAAAACGUGAUGCGUACGAAAAUGGUGGGUAAUAUUCGACUAUAUUUCGGUGGCGCAUAGGAAGAGCAAUGUGUACAGUGU
..((((.((((((((((.......))))))))))...........((((((.((((((((((.((......)).))))).)))))...))))))............))))....... ( -32.90)
>DroEre_CAF1 32493 117 + 1
AGACAUGACAUGAUGAAUUCUGAUUUUACUGUGUAUAAGAACGUGAUGCGUACGAAAAUGGUGGGUAAUACUCGACUAUAUUUCGGUGGAGCCUAGGAAGAGCAAUGUGUACAGUGU
..((((.(((((.((..((((..((((((...........(((.....))).(((((((((((((.....))).))))).)))))))))))....))))...)).)))))...)))) ( -24.80)
>consensus
AGACAUGACAUGGUGAAUUCUGAUUUUACCGUGUAUUAAAACGUGAUGCGUACGAAAAUGGUGGGUAAUAUUCGACUAUAUUUCGGUGGCGCAUAGGAAGAGCAAUGUGUACAGUGU
..((((.((((((((((.......))))))))))...........((((((.((((((((((((((...)))).))))).)))))...))))))............))))....... (-27.04 = -27.22 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:57 2006