| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,632,896 – 17,633,003 |
| Length | 107 |
| Max. P | 0.931791 |
| Location | 17,632,896 – 17,633,003 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 89.44 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -22.98 |
| Energy contribution | -23.30 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.931791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17632896 107 - 27905053 CUUCUGCUCGAGUCGAAGAUCCUAGAUUUGAAUAUUUACCUGCGACGGCAGGUUGGUUUAUUUUGAUUGAAAACCGAGUUUAAGAUGGGCCAAUAUUAUCAUAGAAA .(((((.(((((((..........)))))))......((((((....))))))((((((((((((((((.....)))..))))))))))))).........))))). ( -28.00) >DroSec_CAF1 27817 107 - 1 CUUCUGCUCGAGUCGAAGAUCCUAGAUUUGAAUAUUUACCUGCGAAGGCAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUUAAGAUGGGCCAAUAUUGUCAUACAAA .......(((((((..........)))))))......((((((....))))))(((((((((((((.............)))))))))))))............... ( -27.92) >DroSim_CAF1 27640 96 - 1 -----------GUCGAAGAUCCUAGAUUUGAAUAUUUACCUGCGAAGGCAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUUAAGAUGGGCCAAUAUUAUCAUACAAA -----------.(((((.........)))))......((((((....))))))(((((((((((((.............)))))))))))))............... ( -23.52) >DroEre_CAF1 29684 107 - 1 CUUCUGCUCGAGUCGAAGAUCCUUGAUUUGAAUAUUUACCUGCAGCGGUAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUCAAGAUGGGCCAAUAUUAUCAUACAAA ...(((((((((((((......)))))))))..........)))).((((((((((((((((((((.............))))))))))))))).)))))....... ( -28.42) >DroYak_CAF1 32250 107 - 1 CUUCUGCACGAGUCGAAGAUACUAGAUUUGAAUAUUUACCUGCAGCUGUAGGUUGGUUUAUUUUGAUUGAAAACACAGCUCCAGAUGGGCCAAUAUUAUCAUACAAA ........((((((..........))))))((((((.((((((....)))))).(((((((((.(((((......))).)).))))))))))))))).......... ( -22.50) >consensus CUUCUGCUCGAGUCGAAGAUCCUAGAUUUGAAUAUUUACCUGCGACGGCAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUUAAGAUGGGCCAAUAUUAUCAUACAAA ........((((((..........))))))((((((.((((((....)))))).((((((((((((.............)))))))))))))))))).......... (-22.98 = -23.30 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:54 2006