Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,438,822 – 2,438,936 |
Length | 114 |
Max. P | 0.689816 |
Location | 2,438,822 – 2,438,936 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.24 |
Mean single sequence MFE | -20.83 |
Consensus MFE | -14.44 |
Energy contribution | -15.52 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.05 |
Mean z-score | -2.28 |
Structure conservation index | 0.69 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2438822 114 + 27905053 ACA------CAGAAUAAGCUAACACAAUUUUUUGUUAAUUGAAUUGAAAUAAUUGACUUUCGAGUGCUUUUGGAAAUUGACAAUUUCAUUUGAACCUUUUCAAAGAAAUUCAAUUACUAU ..(------(((((...............))))))(((((((((((((((..(..(.(((((((....))))))).)..)..))))).((((((....))))))..)))))))))).... ( -19.46) >DroSec_CAF1 5264 112 + 1 --A------CACUAUAAGCUAACACUAUUUUUUUUUAAUUGAAUUCAAAUAACUGACUUUCGAGUGCUUAUGGAAAUUGUCAAUUUCAUUUGAACCUUUUCAAAGAAAUUCAAUUACUAU --.------..((((((((...................(((((.(((......)))..)))))..)))))))).(((((..((((((.((((((....)))))))))))))))))..... ( -19.60) >DroSim_CAF1 5371 112 + 1 --A------CACUAUAAGCUAACACAAUUUUUUGUUAAUUGAAUUCAAAUAACUGACUUUCGAGUGCUUAUGGAAAUUGUCAAUUUCAUUUGAACCUUUUCAAAGAAAUUCAAUUACUAU --.------..(((((((((((((........))))).(((((.(((......)))..)))))..)))))))).(((((..((((((.((((((....)))))))))))))))))..... ( -23.50) >DroEre_CAF1 5299 113 + 1 ACA------CACAAUAAGCUAACA-CAAUUUUUGUUAAUUGAAUUCGAAUAACUGACUUUCGAGUGCCAAUGGAAGUUGUCAAUUUCAUUUGAACCUUUUGAAAGAAAUUCAAUUACUAU ...------..............(-(((((((..((......(((((((.........)))))))...))..)))))))).((((((.((..(.....)..)).)))))).......... ( -16.80) >DroYak_CAF1 4906 120 + 1 AAACACAAACACAAUAAGCUAACAACAUUUUUUGGUAAUUGAAUUCAAAUAACUGACUUUCGAGUGCUUAUGGUAAUUGACAAUUUCAUUUGAAUAUUUUCAAAGAAAUUCAAUUACUAU .............((((((...(((......)))....(((((.(((......)))..)))))..))))))(((((((((..(((((.((((((....)))))))))))))))))))).. ( -24.80) >consensus A_A______CACAAUAAGCUAACACAAUUUUUUGUUAAUUGAAUUCAAAUAACUGACUUUCGAGUGCUUAUGGAAAUUGUCAAUUUCAUUUGAACCUUUUCAAAGAAAUUCAAUUACUAU .............(((((((((((........))))).(((((.(((......)))..)))))..))))))((.(((((..((((((.((((((....))))))))))))))))).)).. (-14.44 = -15.52 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:55 2006