Locus 6699

Sequence ID 3R_DroMel_CAF1
Location 17,630,056 – 17,630,156
Length 100
Max. P 0.569016
window10888

overview

Window 8

Location 17,630,056 – 17,630,156
Length 100
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 87.99
Mean single sequence MFE -34.55
Consensus MFE -22.70
Energy contribution -22.51
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.88
Structure conservation index 0.66
SVM decision value 0.07
SVM RNA-class probability 0.569016
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17630056 100 - 27905053
CACUGGC-----ACUGGCA---GCUCCUGGCCUAAACCACAUAUCAAGAGGCUAGAACGUGCUGCGCAGCGCA---GGGGGGAGCAAACCAAGAAAUCCCCCAAAGGACAC
..(((.(-----.((((((---((.((((((((...............)))))))...).))))).))).)))---)((((((.(.......)...))))))......... ( -37.16)
>DroSec_CAF1 24940 100 - 1
CACUGGC-----ACUGGCA---GCUCCUGGCCUAAACCACAUAUCAAGAGGCUAGAAGGUGCUGCGUAGCGCA---GGGGGGAGCAAUCCAAGAAAUCCCCGAAAGGACAC
.....((-----.((((((---((.((((((((...............)))))...))).))))).))).)).---(((((((....))).(....))))).......... ( -34.36)
>DroSim_CAF1 24774 100 - 1
CACUGGC-----ACUGGCA---GCUCCUGGCCUAAACCACAUAUCAAGAGGCUAGAAGGUGCUGCGUAGCGCA---GGGGGGAGCAAUCCAAGAAAUCCCCGAAAGGACAC
.....((-----.((((((---((.((((((((...............)))))...))).))))).))).)).---(((((((....))).(....))))).......... ( -34.36)
>DroYak_CAF1 29200 111 - 1
CACUGGCAACACACUGGCAACCACUCCUGGCCUAAAGCGCAUAUCAAAAGGCUAGAAGGUGCAGGGCAGCACAGGAGGGGGGUGCAAUCGAAGUAAUCCCCGAAAGGACAC
...((.((......)).)).((.((((((((((...((((...((.........))..)))).))))....))))))((((((((.......)).))))))....)).... ( -32.30)
>consensus
CACUGGC_____ACUGGCA___GCUCCUGGCCUAAACCACAUAUCAAGAGGCUAGAAGGUGCUGCGCAGCGCA___GGGGGGAGCAAUCCAAGAAAUCCCCGAAAGGACAC
..(..(.......)..).........(((((((...............)))))))...((((......))))....(((((...(.......)...))))).......... (-22.70 = -22.51 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:51 2006