Locus 6698

Sequence ID 3R_DroMel_CAF1
Location 17,629,716 – 17,629,812
Length 96
Max. P 0.802321
window10887

overview

Window 7

Location 17,629,716 – 17,629,812
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -30.52
Consensus MFE -22.59
Energy contribution -22.70
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -1.55
Structure conservation index 0.74
SVM decision value 0.62
SVM RNA-class probability 0.802321
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17629716 96 - 27905053
UGCCCCAAUCCCACCAUCCCAUUGGCAUGUGCCAGCAUCAUGGGCUGACAUCACAGUCGUUGAUGUCCGGUGGCUCGCACAUAUCCCUGCUGGGCA
.((((.....(((((.......((((....))))((((((..(((((......)))))..))))))..)))))...(((........))).)))). ( -36.30)
>DroPse_CAF1 21009 77 - 1
-------------------CAUCGGCAUGUGCCAGCAUCAUGGGCUCACAUCACAGUCGUUGAUGUCCGGUGGCUCGCACAUCUCGCUGCUGGGCA
-------------------((.((((((((((.(((..(((.((...((((((.......)))))))).)))))).))))))...)))).)).... ( -26.30)
>DroSim_CAF1 24434 96 - 1
UGACCCAACCCCACCAUCCCAUUGGCAUGUGCCAGCAUCAUGGGCUGACAUCACAGUCGUUGAUGUCCGGUGGCUCGCACAUGUCCCUGCUGGGCA
.(.((((...(((((.......((((....))))((((((..(((((......)))))..))))))..)))))...(((........)))))))). ( -34.20)
>DroYak_CAF1 28833 96 - 1
UGCCACAAAACCAUCAUUCCAUUGGCAUGUGCCAGCAUCAUGGGCUGACAUCACAGUCGUUGAUGUCCGGUGGCUCGCACAUCUCACUGCUGGGCA
.(((.((...(((((.......((((....))))((((((..(((((......)))))..))))))..)))))...(((........)))))))). ( -31.80)
>DroAna_CAF1 33100 78 - 1
------------------CGAUCGGCAUGUGCCAGCACCACGGCCUGACCUCCCAGUCACUGAUGUCCGGUGGCUCGCACAUGUCCCUGCUGGGGA
------------------......((((((((.(((((((((...((((......))))....)))..))).))).))))))))(((....))).. ( -27.70)
>DroPer_CAF1 16095 77 - 1
-------------------CAUCGGCAUGUGCCAGCAUCAUGGGCUCACAUCACAGUCGUUGAUGUCCGGUGGCUCGCACAUCUUGCUGCUGGACA
-------------------((.((((((((((.(((..(((.((...((((((.......)))))))).)))))).)))))...))))).)).... ( -26.80)
>consensus
__________________CCAUCGGCAUGUGCCAGCAUCAUGGGCUGACAUCACAGUCGUUGAUGUCCGGUGGCUCGCACAUCUCCCUGCUGGGCA
.....................(((((((((((.(((..(((.((...((((((.......)))))))).)))))).)))))......))))))... (-22.59 = -22.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:50 2006