Locus 6696

Sequence ID 3R_DroMel_CAF1
Location 17,615,659 – 17,615,753
Length 94
Max. P 0.639311
window10884

overview

Window 4

Location 17,615,659 – 17,615,753
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.26
Mean single sequence MFE -24.38
Consensus MFE -12.35
Energy contribution -12.18
Covariance contribution -0.16
Combinations/Pair 1.35
Mean z-score -2.81
Structure conservation index 0.51
SVM decision value 0.22
SVM RNA-class probability 0.639311
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17615659 94 + 27905053
AAAUGGCUUUGGCAUUCGGUUUG-CGAAUUACAUGCAA-----AACUCAUUUGCAUGUCAAAAGCAGCCGAGCAGCAGCCACAGCAACAAAAUCGGUAGC
.....(((.((((.(((((((.(-(.....((((((((-----(.....))))))))).....))))))))).....)))).)))............... ( -30.50)
>DroSec_CAF1 10538 91 + 1
AAAUGGCUUUGGCUUUCGGUUUG-CGAAUUACAUGCAA-----AACUCAUUUGCAUGUCAAAAGCAGCAAAA---CAGCCACAGCAACAAAAUCGGUAGC
.....(((.(((((....(((.(-(.....((((((((-----(.....))))))))).....)))))....---.))))).)))............... ( -26.10)
>DroSim_CAF1 10450 91 + 1
AAAUGGCUUUGGCUUUCGGUUUG-CGAAUUACAUGCAA-----AACUCAUUUGCAUGUCAAAAGCAGCAAAA---CAGCCACAGCAACAAAAUCGGUAGC
.....(((.(((((....(((.(-(.....((((((((-----(.....))))))))).....)))))....---.))))).)))............... ( -26.10)
>DroEre_CAF1 10343 80 + 1
AAAUGGCU------UUCGGUUUG-CGAAUUACAUGCAA-----AACUCAUUUGCAUGUCAAAAGCAG--------CAGCCACAGCAACAAAAUCGGUAGC
.....(((------.((((((((-(.....((((((((-----(.....))))))))).....)).(--------(.......))....))))))).))) ( -21.70)
>DroYak_CAF1 11021 80 + 1
AAAUGGCU------UUCGGUUUG-CGAAUUACAUGCAA-----AACUCAUUUGCAUGUCAAAAGCAG--------CAGCCACAGCAACAAAAUCGGUAGC
.....(((------.((((((((-(.....((((((((-----(.....))))))))).....)).(--------(.......))....))))))).))) ( -21.70)
>DroAna_CAF1 19613 83 + 1
AAGUGGGUUU------UGGUUUGCCGAAUUGUGUGCGAAAUGAAACUCAUUUGCAUGUCAAAAGCA-----------GCCGCGGUAACAAAUUUGUUAAC
..((((..((------(((....)))))((((((((.(((((.....)))))))))).))).....-----------.))))..(((((....))))).. ( -20.20)
>consensus
AAAUGGCUUU____UUCGGUUUG_CGAAUUACAUGCAA_____AACUCAUUUGCAUGUCAAAAGCAG________CAGCCACAGCAACAAAAUCGGUAGC
...(((((......((((......))))..((((((((............))))))))..................)))))................... (-12.35 = -12.18 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:47 2006