Locus 6695

Sequence ID 3R_DroMel_CAF1
Location 17,613,683 – 17,613,782
Length 99
Max. P 0.575787
window10883

overview

Window 3

Location 17,613,683 – 17,613,782
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 78.19
Mean single sequence MFE -23.88
Consensus MFE -17.77
Energy contribution -17.13
Covariance contribution -0.64
Combinations/Pair 1.29
Mean z-score -0.96
Structure conservation index 0.74
SVM decision value 0.08
SVM RNA-class probability 0.575787
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17613683 99 - 27905053
ACAAAUAUCUGGCCAAGCACAAUGCCAUCUUCGACACGCUCGAUGUGGUCACGUACGAGGAGGUUGUCAAGGUGCCAGGUGGGU-UUCAUUGAGCU-UCCU
.....(((((((((....(((..(((.((((((((.(((.....))).....)).))))))))))))....).))))))))(((-((....)))))-.... ( -26.60)
>DroVir_CAF1 12830 93 - 1
ACAAAUAUUUGGCAAAACAUAAUGCCAUAUUCGAUACGCUUGAUGUGGUCACAUACGAAGAGGUUGUCAAAGUGCCAGGUAAUAUUUAAUU--------AA
.....(((((((((....((((((((((((.(((.....))))))))))......(.....)))))).....)))))))))..........--------.. ( -18.40)
>DroPse_CAF1 5035 95 - 1
ACAAGUACUUGGCCAAGCAUAAUGCCAUAUUCGAUAAUCUAGAUGUGGUCACAUACGAGGAGGUUGUCAAGGUGCCAGGUGAGC-UUGUAGUAGCA-----
((((((((((((((..((.....)).......((((((((.(.((((....)))))....))))))))...).)))))))..))-)))).......----- ( -27.70)
>DroWil_CAF1 13376 98 - 1
AUAAAUAUCUGGCCAAACAUAAUGCCAUAUUUGAUACGCUCGAUGUGGUUACAUACGAAGAGGUUGUCAAAGUACCAGGUACGAAUUGAAAAAUUA-UC--
.....(((((((.................((((((((.(((..((((......))))..)))).)))))))...)))))))..((((....)))).-..-- ( -17.15)
>DroMoj_CAF1 9981 101 - 1
ACAAGUACUUGGCCAAACACAACGCCAUAUUCGAUACGCUCGAUGUGGUCACAUACGAAGAGGUUGUCAAAGUGCCAGGUAUGAAAUAAUUGUGAUGUCAU
....((((((((((....((((((((((((.(((.....))))))))))......(.....))))))....).)))))))))................... ( -25.70)
>DroPer_CAF1 835 95 - 1
ACAAGUACUUGGCCAAGCAUAAUGCCAUAUUCGAUAAUCUAGAUGUGGUCACAUACGAGGAGGUUGUCAAGGUGCCAGGUGAGC-UUGUACUAGCA-----
((((((((((((((..((.....)).......((((((((.(.((((....)))))....))))))))...).)))))))..))-)))).......----- ( -27.70)
>consensus
ACAAAUACUUGGCCAAACAUAAUGCCAUAUUCGAUACGCUCGAUGUGGUCACAUACGAAGAGGUUGUCAAAGUGCCAGGUAAGA_UUGAAUGAGCA_____
.....((((((((.....((((((((((((.(((.....))))))))))......(.....))))))......)))))))).................... (-17.77 = -17.13 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:46 2006