Locus 6693

Sequence ID 3R_DroMel_CAF1
Location 17,613,239 – 17,613,344
Length 105
Max. P 0.790846
window10880

overview

Window 0

Location 17,613,239 – 17,613,344
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.45
Mean single sequence MFE -22.13
Consensus MFE -4.72
Energy contribution -5.86
Covariance contribution 1.14
Combinations/Pair 1.20
Mean z-score -1.78
Structure conservation index 0.21
SVM decision value 0.59
SVM RNA-class probability 0.790846
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17613239 105 - 27905053
CGAUGUAUUCAUCUCCAUUCUGUGCCAUAAAAUAGAAUCACCAUAAAUUUCUAGCUUUGGAUAAAACCUU----GUUUUUCCAACAUACAUU-----------UAGGUGGUGUUAUUUUC
.((((....))))...(((((((........)))))))((((((............(((((.(((((...----))))))))))........-----------...))))))........ ( -20.20)
>DroSec_CAF1 7988 119 - 1
CGAUGUAUUCAUCUCCAUUCUAUGCCAUAAAAUAGAAUCACCAUAAAUUUCUAGCUUUGGAUCGAACCUUACUGGUUUUUCCAACAAAAAUUGAAAUUUGA-AUAGGUGCUAUUAUUUCC
.((((....))))...(((((((........)))))))((((.((((((((.....(((((..(((((.....))))).)))))........)))))))).-...))))........... ( -25.12)
>DroSim_CAF1 7998 119 - 1
CGAUGUAUUCAUCUUCAUUCUAUGCCAUAAAAUAGAAUCACCAUAAAUUUCUAGCUUUGGAUAGAACCUUACUGGUUUUUCCAACAAAAAUUUAAAUUUGA-AUAGGUGCUGUUAUUUCC
.((((....))))...(((((((........)))))))((((..............(((((.((((((.....)))))))))))((((........)))).-...))))........... ( -23.90)
>DroEre_CAF1 7901 103 - 1
CGAUGUAUUCGUCUCCAUUCUAUGCCAUAAAGUGGAAUCAUCAUAAAUAUUUAGC-----------------UUGUUUCAGCUAAAUAUAUUUGAAUUUAGCGCAGUGGGUGGUGCUUCC
.((((....))))((((((.(((...))).))))))....(((...(((((((((-----------------(......))))))))))...)))....(((((........)))))... ( -23.60)
>DroYak_CAF1 8460 109 - 1
CGAUGUAUUCAUCUCC----------AUAAAAUAGAAUCAUCAUAAAUUUCUAGCUGUGGAUAGA-CCGUACUUGUUUCAGCAACAUACAUUUUAAUAUAACGCAGUAGGUGGUUUUUCC
.((((....))))(((----------(((...(((((...........)))))..)))))).(((-(((((((((((......................)))).))))..)))))).... ( -17.85)
>consensus
CGAUGUAUUCAUCUCCAUUCUAUGCCAUAAAAUAGAAUCACCAUAAAUUUCUAGCUUUGGAUAGAACCUUACUGGUUUUUCCAACAUAAAUUUAAAUUUAA_AUAGGUGGUGUUAUUUCC
.((((....))))................(((((..((((((................((......))......(((.....)))....................))))))..))))).. ( -4.72 =  -5.86 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:43 2006