| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,601,276 – 17,601,379 |
| Length | 103 |
| Max. P | 0.678906 |
| Location | 17,601,276 – 17,601,379 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.18 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -15.98 |
| Energy contribution | -17.70 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17601276 103 + 27905053 AGGCCAGUCCAGGCCAGCAAAAUUGCUUCAAAUUGCUGCAGCAAUGCUGGCACGUUUAGUAAUUAUAAAGCAAUUUAAUGAUCUAAAGGAUUCGUGCAUUAUU ..((((((((..(((((((...(((((.((......)).))))))))))))...(((((..((((((((....))).))))))))))))))).).))...... ( -29.60) >DroSec_CAF1 3717 103 + 1 AGGCCAGUCCAGGCCAACAAAAUUGCUUCAAAUUGCUGAAGCAAUGCUGGCACGUUUUGUAAUUAUAAAGCAAUUUAAUGAUCUAAAGGAGUCAUGCAUUAUU .((((......))))..((..(((((((((......)))))))))..))((..(((((((....)))))))......(((((........)))))))...... ( -28.90) >DroSim_CAF1 3656 103 + 1 AGGCCAGUCCAGGCCAGCAAAAUUGCUUCAAAUUGCUGCAGCAAUGCUGGCACGUUUUGUAAUUAUAAAGCAAUUUAAUGAUCUAAAGGAGUCGUGCAUUAUU ..((((.(((..(((((((...(((((.((......)).))))))))))))..(((((((....)))))))................))).).).))...... ( -29.00) >DroEre_CAF1 3666 98 + 1 AGGCC-----AGGCCAGCAAAAUUGCUUCAAAUUGCUGCAGCAAUGCUGGCACGUUUUGUAAUUAUAAGGCAAUUUGAUGAUCAAAAGGAGUCGUGCAUUAUU .((((-----..(((((((...(((((.((......)).))))))))))))..(((((((....)))))))..((((.....))))..).))).......... ( -25.40) >DroYak_CAF1 3628 98 + 1 AGGCC-----AGGCCAGCAAAAUUGCUUCAAAUUGCCGCAGCAAUGCUGGCACGUUUUGUAAUUAUAAAGCAAUUUAAUGAUCUAAAGGAGUCGUGCAUUAUU .(((.-----..))).(((.....(((((....(((((((....))).)))).(((((((....)))))))................)))))..)))...... ( -25.30) >DroAna_CAF1 3595 88 + 1 AGGCCAGUU----CCAGCAAAAUUGCUUUAAAUUACAGCAGUA-----------UUUGGUCAUUAGAAAGUCAUUUUGUAUGCUUUCACCGCCAUACAUAAUU .(((.....----....((((((((((.........)))))).-----------)))).......(((((.(((.....))))))))...))).......... ( -17.10) >consensus AGGCCAGUC_AGGCCAGCAAAAUUGCUUCAAAUUGCUGCAGCAAUGCUGGCACGUUUUGUAAUUAUAAAGCAAUUUAAUGAUCUAAAGGAGUCGUGCAUUAUU .((((......)))).(((((((((((....(((((....)))))...)))).))))))).................(((((........)))))........ (-15.98 = -17.70 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:41 2006