| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,599,148 – 17,599,247 |
| Length | 99 |
| Max. P | 0.688865 |
| Location | 17,599,148 – 17,599,247 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -13.02 |
| Energy contribution | -13.05 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17599148 99 - 27905053 UUAAU------------A--AAAUAUUG-AUGU-UUUUAUAGAUACAUCAAGAUGUCCAGUCCCCAUUUGAACAAUCUGAUCAUUGUGGGCUGUAUGAUGACCUAUUUGAGCAUC .....------------.--.......(-((((-((..((((...(((((.......((((((.((..(((.(.....).))).)).))))))..)))))..))))..))))))) ( -23.20) >DroVir_CAF1 1623 101 - 1 UAACU--U------------ACCAAGUCUAUAUUACUUGCAGCUACAUCAAAAUGUCAAGUCCACAUUUGAAUAAUCUGAUUAUUGUUGGCUGCAUGCUGACCUAUCUAAGCAUC .....--.------------.................(((((((((((((.....((((((....))))))......)))....)).))))))))((((..........)))).. ( -18.30) >DroGri_CAF1 2145 109 - 1 AAAAU--U---AAUUCUAAAAUCGA-UCGGUAUUUUUUGCAGCUACAUCAAGAUGUCUAGUCCGCAUUUGAACAAUUUGAUCAUCGUCGGCUGCAUGCUGACCUAUCUGAGCAUC .....--.---..........((((-(.(((......(((((((((((((((.(((.(((.......))).))).))))))....)).))))))).....))).))).))..... ( -22.10) >DroSim_CAF1 1535 99 - 1 UAAAU------------A--AAAUAGUC-AUAU-UUUUAUAGAUACAUCAAGAUGUCCAGUCCCCAUUUGAACAAUCUGAUCAUUGUGGGCUGUAUGAUGACCUAUCUGAGCAUC .....------------(--(((((...-.)))-)))..((((((..(((..(((..((((((.((..(((.(.....).))).)).)))))))))..)))..))))))...... ( -17.90) >DroEre_CAF1 1583 97 - 1 UUAAUU-----------------AAACC-UUAUGUUUUACAGAUACAUCAAGAUGUCCAGUCCGCAUCUGAACAACCUGAUCAUUGUGGGCUGUAUGAUGACCUAUCUGAGCAUC ......-----------------.....-..(((((...((((((..(((..(((..(((((((((..(((.(.....).))).))))))))))))..)))..))))))))))). ( -24.30) >DroYak_CAF1 1548 109 - 1 UUCGUUUUAUUGAU---A--AAAUAAUC-UUUUCUUUUAUAGAUACAUCAAGAUGUCCAGCCCGCAUCUGAACAACCUGAUCAUUGUGGGCUGUAUGAUGACCUACCUGAGCAUC ...((((((((.((---(--(((.((..-..)).)))))).))))(((((.......(((((((((..(((.(.....).))).)))))))))..)))))........))))... ( -23.90) >consensus UAAAU____________A__AAAUAAUC_AUAU_UUUUACAGAUACAUCAAGAUGUCCAGUCCGCAUUUGAACAAUCUGAUCAUUGUGGGCUGUAUGAUGACCUAUCUGAGCAUC .......................................(((.((..(((..(((..(((((((((..(((.(.....).))).))))))))))))..)))..)).)))...... (-13.02 = -13.05 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:40 2006