Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,438,367 – 2,438,461 |
Length | 94 |
Max. P | 0.518891 |
Location | 2,438,367 – 2,438,461 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.57 |
Mean single sequence MFE | -15.00 |
Consensus MFE | -14.61 |
Energy contribution | -14.17 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.32 |
Structure conservation index | 0.97 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2438367 94 + 27905053 GCAUUGAUAUGCAAAAGCACUCCCUUUAACUCCCAACCUCACAAUUCACAUUUCACCUACAUUUCUUGAGUCCUAUGGGGUUACGAAAUGUUAU ((((....))))..............................................(((((((.(((.(((...))).))).)))))))... ( -13.60) >DroSec_CAF1 4819 92 + 1 GCAUUGAUAUGCAAAAACACUCCCUUAAACUC-CAACCUCACAAUUCGCAUUUCACCUACAUUUCUUGAGUCCU-UAGGGCUGCGAAAUGUUAU ((((....))))....................-.......(((.(((((..........((.....))(((((.-..)))))))))).)))... ( -15.70) >DroSim_CAF1 4927 92 + 1 GCAUUGAUAUGCAAAAACACUCCCUUAAACUC-CAGCCUCACAAUUCGCAUUUCACCUACAUUUCUUGAGUCCU-UAGGGCUGCGAAAUGUUAU ((((....))))....................-.......(((.(((((..........((.....))(((((.-..)))))))))).)))... ( -15.70) >consensus GCAUUGAUAUGCAAAAACACUCCCUUAAACUC_CAACCUCACAAUUCGCAUUUCACCUACAUUUCUUGAGUCCU_UAGGGCUGCGAAAUGUUAU ((((....))))...................................(((((((.....((.....))(((((....)))))..)))))))... (-14.61 = -14.17 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:54 2006