Locus 6689

Sequence ID 3R_DroMel_CAF1
Location 17,598,552 – 17,598,656
Length 104
Max. P 0.529397
window10876

overview

Window 6

Location 17,598,552 – 17,598,656
Length 104
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 77.51
Mean single sequence MFE -22.08
Consensus MFE -15.93
Energy contribution -16.18
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -0.92
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.529397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17598552 104 + 27905053
CUUGGAAUCGUUCAGAGCCGGUAUAGAAACAUGUCGAGUUUCCCAGGCCAAAAAGGCGCCAAAAACCUAUUGAAAAA-AA---UUAUUGCUUUAUU--AUAAUGAUAUCU
...(((((((((.(((((.(((...(((((.......)))))....(((.....)))))).........((....))-..---.....)))))...--..)))))).))) ( -16.50)
>DroVir_CAF1 1043 100 + 1
CUUGGAGUCAUUUAGGGCUGGUAUGGAGACAUGCCUGGUUUCCCAGGCCAAGAAGGCGCCAAAAACCUAACGGUGGGAAA--UAAAUUGU--------AUAAUAAUCAUU
.....((((......))))((((((....))))))..(((((((..(((.....))).......(((....)))))))))--).......--------............ ( -31.70)
>DroSec_CAF1 995 100 + 1
CUUGGAAUCGUUCAGGGCCGGUAUGGAAACAUGUCGAGUUUCCCAGGCCAAAAAGGCGCCAAAAACCUAUUGAAA-A-AA---UAAUUACUUU-----AUAAUGAUAUCU
...(((((((((...(((((..(((....)))..))..........(((.....)))))).......((((....-.-))---))........-----..)))))).))) ( -21.40)
>DroSim_CAF1 943 101 + 1
CUUGGAAUCGUUCAGAGCCGGUAUGGAAACAUGUCGAGUUUCCCAGGCCAAAAAGGCGCCAAAAACCUAUUGAAAAA-AA---UAAUUACUUU-----AUAAUGAUAUCU
...(((((((((..((((((..(((....)))..)).)))).....(((.....)))....................-..---..........-----..)))))).))) ( -19.40)
>DroEre_CAF1 994 103 + 1
CUUGGAAUCGUUUAGAGCCGGUAUGGAAACAUGUCGAGUCUCCCAGGCCAAAAAGGCGCCGAAGACCUAUGGGAAAA-A-AAAGAAUUAUUUC-----AUAAUGAUUUAU
....((((((((..((..((..(((....)))..))..))(((((.(((.....)))...(.....)..)))))...-.-...(((....)))-----..)))))))).. ( -25.00)
>DroWil_CAF1 18471 97 + 1
CUUGGAAUCAUUUAGAGCCGGUAUGGAGACAUGACGUGUUUCCCAGGCCAAAAAGGCACCAAAGACCUGUA-------------AAUUAUUUAAGCACAUAUCAAGUUUU
((((((...(((((.((..(((..((((((((...))))))))...(((.....))))))......)).))-------------)))..))))))............... ( -18.50)
>consensus
CUUGGAAUCGUUCAGAGCCGGUAUGGAAACAUGUCGAGUUUCCCAGGCCAAAAAGGCGCCAAAAACCUAUUGAAAAA_AA___UAAUUACUUU_____AUAAUGAUAUCU
.((((.........(((((((((((....))))))).)))).....(((.....))).))))................................................ (-15.93 = -16.18 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:39 2006