Locus 6687

Sequence ID 3R_DroMel_CAF1
Location 17,584,748 – 17,584,850
Length 102
Max. P 0.631375
window10873

overview

Window 3

Location 17,584,748 – 17,584,850
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 83.01
Mean single sequence MFE -37.32
Consensus MFE -26.77
Energy contribution -28.08
Covariance contribution 1.31
Combinations/Pair 1.34
Mean z-score -1.80
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.631375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17584748 102 - 27905053
GCGCGGCCUCCGUCAGCGGAACUCUCACCUGUUGGGUGGCGGCCUCAUAAAUCAACCUGCUGAUAUCGAUGGCCUCCACCUGCGCACCUGCCGCAUCCAAAA
..(((((.((((....)))).........((((((((((.((((((....((((......))))...)).)))).))))))).)))...)))))........ ( -37.90)
>DroPse_CAF1 21893 101 - 1
-CAGUGCCUGAGAUAGUGGCACCGUCAGUUGCUGGGUCGCCUCCUCAUAUAUCAGCUGACUACUAUCUAUCGGCUGCACUUGAUCCCCGGACCCGUUGUAUA
-.((((((((((((((((.....((((((((.((((......)).)).....)))))))))))))))..))))..))))).......((....))....... ( -26.00)
>DroSec_CAF1 19989 102 - 1
GCGCGGCCUGCGUCAGCGGAACUCUCACCUGUUGGGUGGCGGCCUCAUAAAUCAACCGGCUGAUAUCGAUGGCCUCCACCUGCGCACCUGCCGCAUCCAAAA
..(((((.(((((((((((.........))))))(((((.((((((....((((......))))...)).)))).))))).)))))...)))))........ ( -42.00)
>DroSim_CAF1 19670 102 - 1
GCGCGGCCUGCGUCAGCGGAACUCUCACCUGUUGGGUGGCGGCCUCAUAAAUCAACCGGCUGAUAUCGAUGGCCUCCACCUGCGCACCUGCCGCAUCCAAAA
..(((((.(((((((((((.........))))))(((((.((((((....((((......))))...)).)))).))))).)))))...)))))........ ( -42.00)
>DroEre_CAF1 19365 102 - 1
GCGCGGCCUGCGUCAGCGGAACCCUCACCUGUUGGGUGGCGGCCUCAUAAAUCAGCCGGCUGAUAUCGAUGGCCUCCACCCGUGCACCAGCCGCAUCCAAAA
..(((((((((....))))..........((((((((((.((((((....(((((....)))))...)).)))).))))))).)))...)))))........ ( -44.60)
>DroYak_CAF1 22270 102 - 1
GCAUGGCUUGCGUCAGCGGAACUUUCACCUGUUGGGUGGCGGCCUCAUAAUUAAGCCGGCUGAUAUCGAUGGCCUCCAGCUGCACACCUGCCGCAUCCAAAA
((..(((..(.(((((((((....(((((.....))))).(((((((((....((....))..))).)).))))))).)))).)).)..)))))........ ( -31.40)
>consensus
GCGCGGCCUGCGUCAGCGGAACUCUCACCUGUUGGGUGGCGGCCUCAUAAAUCAACCGGCUGAUAUCGAUGGCCUCCACCUGCGCACCUGCCGCAUCCAAAA
..(((((.(((((((((((.........))))))(((((.((((......((((......))))......)))).))))).)))))...)))))........ (-26.77 = -28.08 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:36 2006