| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,583,050 – 17,583,150 |
| Length | 100 |
| Max. P | 0.777814 |
| Location | 17,583,050 – 17,583,150 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 68.95 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -14.79 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17583050 100 + 27905053 UUAUAAUUCACUU------CUUU----CUGCAGCAUGGGCGGCUACUCCGCUGUGGCCACGGUGAUUUCCAAUAUCGCCGCCCGUUUCACCACAAAUCAGCAGUUAACUG .............------....----((((.....((((((((((......))))))..((((((.......))))))))))((......))......))))....... ( -31.80) >DroEre_CAF1 17547 100 + 1 CUAUAAUUGCCCU------CUUU----CUGCAGCAUGGGCGGCUACUCCGCUGUGGCCACUGUGAUAUCCAACAUCGCCGCCCGCUUCACCACCGAGAAGCAGUUGACCG ...(((((((.((------(...----.((.(((..((((((((((......))))))...(((((.......))))).))))))).)).....)))..))))))).... ( -32.90) >DroWil_CAF1 20518 103 + 1 UAAUAAUUGUUUUUGU---AUUU----UUUUAGAAUGGGUGGCUACUCAGCAGUGGCUACUGUAAUCUCUAAUAUUGCUGCACGUUUCACUGAGCAAACCCAAUACGAGG ...........(((((---(((.----..(((((((.((((((((((....))))))))))...)).)))))..(((((.((........)))))))....)))))))). ( -23.90) >DroYak_CAF1 20437 100 + 1 UCAUAAUUAACUU------CUUU----CUGCAGCAUGGGCGGCUAUUCCGCGGUGGCCACUGUGAUUUCCAACAUCGCCGCCCGUUUCACCACCCAACAGCAGUUGACCG ............(------(...----((((....((((.((......((.((((((...(((........)))..)))))))).....)).))))...))))..))... ( -28.10) >DroAna_CAF1 28093 91 + 1 -------------------CUUUGCAACAACAGAAUGGGCGGAUACUCCGCAGUGGCGACUGUCAUCUCCAACAUCGCCGCCCGCUUCACCACCGAACAGCAGUACGCCG -------------------....((...........((((((.....)))).(((((((.(((........))))))))))))(((((......))..))).....)).. ( -25.70) >DroPer_CAF1 18614 110 + 1 UCAUCACUAACUUUGACAUUUUUUCCUCCACAGAAUGGGUGGAUACUCGGCAGUGGCCACGGUCAUCUCAAACAUUGCUACCCGCUUCACCGAGCAGAAGCAGUACGAAG ..........(((((((...................((((((.......(..(((((....)))))..)........))))))(((((........))))).)).))))) ( -26.66) >consensus UCAUAAUUAACUU______CUUU____CUGCAGAAUGGGCGGCUACUCCGCAGUGGCCACUGUGAUCUCCAACAUCGCCGCCCGCUUCACCACCCAAAAGCAGUACACCG ...................................(((((((((((......))))))...(((((.......))))).))))).......................... (-14.79 = -15.02 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:35 2006