| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,570,991 – 17,571,101 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 17,570,991 – 17,571,101 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.93 |
| Mean single sequence MFE | -39.28 |
| Consensus MFE | -27.40 |
| Energy contribution | -27.04 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17570991 110 + 27905053 CUCAAUAACAAAGUGUCUUUUACCGAGCAGCCAACAUGGCACGGUGGCUGCUUAACUCGUUUUCGCUGAUCCUGCUCCUGGCAGUGUGCAGCCUACAGGCGCGCCUGAUC ............((((((......(((((((((.(.......).))))))))).....((....(((((..((((.....))))..).))))..))))))))........ ( -33.70) >DroPse_CAF1 6199 109 + 1 CUCAAUUUUCAAGUGAUUCUU-CGGUGCAGCCGACAUGGCAAUGUGGCUGCUUAACUCCUCUCUGCUGCUGCUGCUGCUGGCAGCAGUCAGCCUGCAGGCGAGACUGAUC ....................(-((((((((((.((((....)))))))))).......((((((((.((((((((((....)))))).))))..))))).)))))))).. ( -47.20) >DroSim_CAF1 5476 110 + 1 CUCAAUAUCAAAGUGUCUUUCACCGAGCAGCCAACAUGGCACGGUGGCUGCUUAACUCGUUUUCGCUGAUCCUGCUCCUGGCAGUGGGCAGCCUGCAGGCGCGCCUGAUC ......((((..((((((......(((((((((.(.......).))))))))).....((....((((..(((((.....)))).)..))))..))))))))...)))). ( -36.90) >DroEre_CAF1 5287 110 + 1 CUCAAUAACAAAGUGUCUUUGUCGGAGCAGCCAACAUGGCACGAUGGCUGCUGAACUCGCUUUCGCUGAUCCUGCUCCUGACAGCAGGCAGCCUGCAGGCGCACCUGAUC ............((((((.(((((((((((((.....))).(((.(((..........))).))).......)))))).))))(((((...)))))))))))........ ( -38.40) >DroYak_CAF1 8289 110 + 1 CUCAAUACCAAAGUGUCUUUUCCGGAGCAGCCAACAUGGCACGGUGGCUGCUAAACUCGUUUUCACUGAUCCUGCUCCUGGCAGUGGGCAGCCUGCAGGCGCGCCUGAUC ...........(.((((......(((((((((.....))).((((((..((.......))..))))))....)))))).)))).)((((.(((....)))..)))).... ( -35.60) >DroPer_CAF1 6192 109 + 1 CUCAAUAUUCAAGUGAUUCUU-CGGUGCAGCCGACAUGGCAAUGUGGCUGCUUAACUCCUCUCUGCUGCUGCUGCUGCUGGCAGCAGUCAGCCUGCAGGCCAGACUGAUC ..............((((..(-((((((((((.((((....))))))))))...........((((.((((((((((....)))))).))))..))))))).))..)))) ( -43.90) >consensus CUCAAUAUCAAAGUGUCUUUU_CGGAGCAGCCAACAUGGCACGGUGGCUGCUUAACUCGUUUUCGCUGAUCCUGCUCCUGGCAGCAGGCAGCCUGCAGGCGCGCCUGAUC ...........((((.........(((((((((...........)))))))))..........))))....((((.....))))(((((.(((....)))..)))))... (-27.40 = -27.04 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:26 2006