| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,563,008 – 17,563,128 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 17,563,008 – 17,563,128 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.42 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -20.82 |
| Energy contribution | -22.70 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17563008 120 + 27905053 GAGUGGGAAAAGCGAUGGCCAUGCCCAAAAGCAUCCGAAUCACAAUAUUAAAUGCAAUACUAAGCUUCAUUUUCAAUUUUAAAUUCUCUUGGUUUUGCAGAACUCUUUUAUACCAUUCCA ((((((.(((((.(.(((..((((......)))))))...............(((((.((((((....((((........))))...)))))).)))))...).)))))...)))))).. ( -26.00) >DroSec_CAF1 2230 120 + 1 GAGUGGGAAAAGCGAUGGCCAUGCCCAAAAGCAUCGGAAUAACAAUAUUGAAUGCAGCACUAAGCUUCAUUUUCUAUUUCUAAUUCUCUUGGUGUUGCAGAACUCUUUUAUACCAUUCCA ((((((.(((((.(....((((((......)))).))...............((((((((((((.......................))))))))))))...).)))))...)))))).. ( -31.10) >DroSim_CAF1 2246 120 + 1 GAGUAGGAAAAGCGAUGGCCAUGCCCAAAAGCAUCCGAAUAACAAUAUUGAAUGCAGCACUAAGCUUCAUUUUCUAUUUGAAAUUCUCUUGGAAUUGCAGAACUCUUUUAUACCAUUCCA .....((((..(((((..((((((......)))...((((..(((....(((((.(((.....))).))))).....)))..))))...))).)))))((....)).........)))). ( -23.10) >DroEre_CAF1 5018 120 + 1 GAAUGGGAAAAGCGAUGGCCAUGCCCCAAAACAUCCGAAUGACAAUAAUGAGUGCAGCACUGAGCUUCAUGUUGUAAUUCAAAUACUGUUCGUGUUGCAGAACUCUUUUAUACCAUUCCU ((((((.(((((.(..(((...)))...........................((((((((.((((......(((.....))).....))))))))))))...).)))))...)))))).. ( -29.50) >DroYak_CAF1 5191 120 + 1 GAGUGGGAAAAGCGAUGGCCAGGCCCAAAAACAUCCGUAUAACGAUGGUGAAUGCAACACUGAGCUUCAUGUUGUAUUUCGAAUUGUGUUCGUGUUGCAGAACUCUUUUAUACCAUUACU ...((((....((....))....)))).........((((((.((.(((...((((((((.((((..((..(((.....)))..)).))))))))))))..))).))))))))....... ( -30.90) >consensus GAGUGGGAAAAGCGAUGGCCAUGCCCAAAAGCAUCCGAAUAACAAUAUUGAAUGCAGCACUAAGCUUCAUUUUCUAUUUCAAAUUCUCUUGGUGUUGCAGAACUCUUUUAUACCAUUCCA ((((((.(((((.(..(((...)))...........................((((((((((((......((((.....))))....))))))))))))...).)))))...)))))).. (-20.82 = -22.70 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:23 2006