| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,557,013 – 17,557,131 |
| Length | 118 |
| Max. P | 0.612310 |
| Location | 17,557,013 – 17,557,131 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 93.82 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -24.19 |
| Energy contribution | -24.63 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17557013 118 - 27905053 ACCCAUCCACUCCACUGUCCUCUCACCUUGCCUUAAUUGUUUUGUUGCACUCGGCGGGCGCGAGAGGCAACUUUCUAUUUGCGCAUUUUCACAGGGAAAAAUAUUUAAUUUUCCUUC-U ..............((((.(((((.(((((((.....(((......)))...)))))).).)))))((((........))))........))))((((((........))))))...-. ( -27.70) >DroSim_CAF1 4932 118 - 1 ACCCAUCCACUCCACUGUCCUCUCACCAUGCCUUAAUUGUUUUGUUGCACUCGGCGGGCGCGAGAGGCAACUUUCUAUUUGCGCAUUUUCACAGGGAAAAAUAUUUAAUUUUCCCUC-U ..((....((......))...........(((.....(((......)))...)))))(((((((((....))))).....))))........((((((((........)))))))).-. ( -26.40) >DroEre_CAF1 9433 118 - 1 ACCCAUCCCCUCCACCGACCGCUCACCUUGCCAUAAUUGUUUUGUUGCACUGGGCGGGCGAGAGAGGCAACUUUCUAUUUGCGCAUUUUCACAGGGAAAAA-AUUUAAUUUUCCUUCCU .....((((.........(((((((...(((.((((.....)))).))).)))))))(((((((((....)))))).....))).........))))....-................. ( -32.50) >consensus ACCCAUCCACUCCACUGUCCUCUCACCUUGCCUUAAUUGUUUUGUUGCACUCGGCGGGCGCGAGAGGCAACUUUCUAUUUGCGCAUUUUCACAGGGAAAAAUAUUUAAUUUUCCUUC_U ................(.((((((.(((((((.....(((......)))...)))))).).)))))))........................((((((((........))))))))... (-24.19 = -24.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:19 2006