| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,556,865 – 17,556,984 |
| Length | 119 |
| Max. P | 0.522575 |
| Location | 17,556,865 – 17,556,984 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.22 |
| Mean single sequence MFE | -30.64 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.20 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17556865 119 + 27905053 AGCGACACAAAGCUGGCAGCUGUGACACAUCAACAUUUGAAAAUUUCCAUUUGAAAUGAGGAGGAAAAUAAAUAUUAUCGUUUCCAGC-GCUGUCGCAAGUCGCAUCUUCAAUAAAAAGC .(((((....(((.....)))(((((((.((..(((((.(((.......))).)))))..))(((((.............)))))...-).))))))..)))))................ ( -27.32) >DroSim_CAF1 4790 113 + 1 AGCGACACAAAGCUGGCAGCUGUGACACAUCAACAUUUGAAAAUUCUCAUUUGAAAUGAGGCGGAAAAGAAAUAUUAUCGUUGCCAGCCGCUGU-------CGCAUCUUCAAUAAAAAGU .((((((....(((((((((.((((....(((.....)))....((((((.....)))))).............)))).)))))))))...)))-------)))................ ( -32.70) >DroEre_CAF1 9287 117 + 1 AGCGACACAAAGCUGGCAGCUGUGA-ACAUCA--ACUUGAAAAUUCCCAUUUCAAAUGAGGCGGAAAAGAAAUAUUAUCGUUUUCAGCUGCUGCCUCAAGUCGCAUCUUCUAUAAAAAGC .(((((.....((.((((((((.((-((.((.--....))...((((..((((....)))).)))).............)))).)))))))))).....)))))................ ( -31.90) >consensus AGCGACACAAAGCUGGCAGCUGUGACACAUCAACAUUUGAAAAUUCCCAUUUGAAAUGAGGCGGAAAAGAAAUAUUAUCGUUUCCAGC_GCUGUC_CAAGUCGCAUCUUCAAUAAAAAGC .(((((.....((.(((.((((.((.((.(((.....)))...((((..(((.....)))..)))).............)).)))))).))))).....)))))................ (-19.08 = -19.20 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:18 2006