Locus 6673

Sequence ID 3R_DroMel_CAF1
Location 17,554,580 – 17,554,700
Length 120
Max. P 0.938985
window10850

overview

Window 0

Location 17,554,580 – 17,554,700
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.88
Mean single sequence MFE -32.60
Consensus MFE -25.65
Energy contribution -27.34
Covariance contribution 1.69
Combinations/Pair 1.07
Mean z-score -2.29
Structure conservation index 0.79
SVM decision value 1.30
SVM RNA-class probability 0.938985
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17554580 120 + 27905053
GUGGAAGCAAUUACUGCGUGGAACCAACCCCAUCUUACCACUGUGGUUCCCUUCCCUCCAACCAUCCACCGGUAUUUGCUGGCGGAAUUGCGGAGUAAUUUGCAAACGCACCAAUAUCCA
(((...(((((((((.((((((((((.................)))))))..............(((.(((((....))))).)))...))).))))).))))...)))........... ( -35.73)
>DroSim_CAF1 1951 120 + 1
GUGGAAGCAAUUACCACGUGGAACCAACCCCUUCUCACCACUGUGGUUCCCUUCCCUCCAACCAUCCACCGGUAUUUGCUGGCGGAAUUGCGGAGUAAUUUGCAAACGCACCAAUAUCCA
..(((((.....(((((((((................)))).)))))...))))).........(((.(((((....))))).))).(((((((....)))))))............... ( -34.39)
>DroEre_CAF1 6312 109 + 1
AUGGAAGCAAUUACCACGUGGAACC---CCUUGCUCGCCACUUUGGUUCCCUUCCCUC--------CACCGGUAUUUGCUGGCGGAAUUGCGGAGUAAUUUGCAAACGCACCAAUAUCCA
.(((((((((.((((..(((((...---........(((.....))).........))--------))).)))).))))).(((...(((((((....))))))).))).......)))) ( -34.15)
>DroYak_CAF1 6543 109 + 1
AUGGAAGCAAUUACCACGUGGAACC---UUUUGCUCACCACUUUCGUUCCCUUCCCUG--------CACCAGUAUUUGCUGGCGGAAUUGCAGAGUAAUUUGCAAACGCACCAAUAUCCA
.(((((((((.(((...((((....---.........))))....((..........)--------)....))).))))).(((...(((((((....))))))).))).......)))) ( -26.12)
>consensus
AUGGAAGCAAUUACCACGUGGAACC___CCCUGCUCACCACUGUGGUUCCCUUCCCUC________CACCGGUAUUUGCUGGCGGAAUUGCGGAGUAAUUUGCAAACGCACCAAUAUCCA
.(((((((((.((((..((((................))))...(((....................))))))).))))).(((...(((((((....))))))).))).......)))) (-25.65 = -27.34 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:14 2006