Locus 6672

Sequence ID 3R_DroMel_CAF1
Location 17,551,035 – 17,551,141
Length 106
Max. P 0.568117
window10849

overview

Window 9

Location 17,551,035 – 17,551,141
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -31.35
Consensus MFE -17.56
Energy contribution -18.36
Covariance contribution 0.80
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.56
SVM decision value 0.07
SVM RNA-class probability 0.568117
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17551035 106 - 27905053
AAAAUCUGCAAACGGC-------AACUGGCAGCCGGCAACCGGCAACACUGGCAACUUGCAA-------CAUUCAGCCUGCCACUGCCACUGCUAUCGCGAGAUGAGGCGAGCUCAACAA
.......((....(((-------(..((((((((((...)))))......(((.........-------......)))))))).))))..(((((((....)))..)))).))....... ( -32.86)
>DroSec_CAF1 60063 113 - 1
AAAAUCUGCAAACGGCAACCGGCAACUGGCAGCCGGCAACCGGCAACACUGGCAACUUGCAA-------CAUUCAGCCUGCCACUGCCACUGCUAUCGCGAGAUGAGGCGAGCUCAACAA
.......((....((((...((((...(((.(((((...))))).......((.....))..-------......)))))))..))))..(((((((....)))..)))).))....... ( -34.80)
>DroSim_CAF1 61204 113 - 1
AAAAUCUGCAAACGGCAACCGGCAACUGGCAGCCGGCAACCGGCAACACUGGCAACUUGCAA-------CAUUCAGCCUGCCACUGCCACUGCUAUCGCGAGAUGAGGCGAGCUCAACAA
.......((....((((...((((...(((.(((((...))))).......((.....))..-------......)))))))..))))..(((((((....)))..)))).))....... ( -34.80)
>DroYak_CAF1 57252 113 - 1
AAAAUCUGCAA-------CCGGCAACUGGCAACCGGCAACCGGCAACACUGGCAACCUGCAACUGCCAGCAUUCAGCCUGCCACUGCCACUGCGAUCGCGCGAUGAGGUGAGCUCAACAA
.......((.(-------((((((..(((((...(((....(....).((((((.........))))))......)))))))).))))..((((....))))....)))..))....... ( -36.50)
>DroAna_CAF1 59579 92 - 1
AAAA-AUUAAAACGAAAAAUAGUA------AAUCUGCAACCGGCAAU--GGGCAACCUGCAA-------CAUUCAGCCUGCC------------AUCGCGCGAUGAGGCAAGCUCAACAA
....-...................------.....((.....(((..--((....)))))..-------......((((..(------------(((....))))))))..))....... ( -17.80)
>consensus
AAAAUCUGCAAACGGCAACCGGCAACUGGCAGCCGGCAACCGGCAACACUGGCAACUUGCAA_______CAUUCAGCCUGCCACUGCCACUGCUAUCGCGAGAUGAGGCGAGCUCAACAA
..........................((((((((((...))))).....(((((..(((..............)))..))))).))))).....(((....)))(((.....)))..... (-17.56 = -18.36 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:13 2006