Locus 6670

Sequence ID 3R_DroMel_CAF1
Location 17,547,081 – 17,547,172
Length 91
Max. P 0.508501
window10847

overview

Window 7

Location 17,547,081 – 17,547,172
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 89.23
Mean single sequence MFE -17.96
Consensus MFE -13.64
Energy contribution -13.92
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -1.48
Structure conservation index 0.76
SVM decision value -0.05
SVM RNA-class probability 0.508501
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17547081 91 - 27905053
GCCAUAACUAAUCUAAGCCAACUUCCGUGCGAAACCCAUAUAAUUACACUAUUUUGGAUGGUUAUGGAUUUUGCCUUCGUUGUGGUCUUAC
((((((((......(((....)))..(.((((((.(((((.......((((((...))))))))))).)))))))...))))))))..... ( -19.71)
>DroSec_CAF1 56088 86 - 1
GCCAUAACU-----AAGCCAACUCCCGUGCGAAACCCAUAUAAUUACACUAUUUUGGAUUGUUAUGGCUUUUGCCUUCGUUGUUGUCUUAC
........(-----(((.((((...((.((((((.((((((((((.((......))))))).))))).))))))...))..)))).)))). ( -19.10)
>DroSim_CAF1 57130 91 - 1
GCCAUAACUAAUCUAAGCCAACUCCCGUGCGAAACCCAUAUAAUUACACUAUUUUGGAUGGUUAUGGCUUUUGCCUUCGUUGUUGUCUUAC
.............((((.((((...((.((((((.(((((.......((((((...))))))))))).))))))...))..)))).)))). ( -18.51)
>DroEre_CAF1 57049 91 - 1
UCCAUAUUUAAUCUAAGCCAACUCCCGUGUGAAGCCCAUAUAAUUACACUAUUUUUGAUGCUUAUGGCUUUAGCCUUCGUUGUUGUCUUAC
.............((((.((((...((.((((((((.(((..((((.........))))...)))))))))).)...))..)))).)))). ( -14.40)
>DroYak_CAF1 53561 91 - 1
GCCAUAUUUAAUCUAAGGCAACUCCCGUGUAAAACCUAUAUAGUUACACUAUUUUGGAUGCUUAUGGCUUUAGCCUUCGUUGUUGUUUUAC
((((((....(((((((....)....((((((...........))))))....))))))...))))))....................... ( -18.10)
>consensus
GCCAUAACUAAUCUAAGCCAACUCCCGUGCGAAACCCAUAUAAUUACACUAUUUUGGAUGGUUAUGGCUUUUGCCUUCGUUGUUGUCUUAC
.............((((.((((...((.((((((.(((((......((......))......))))).))))))...))..)))).)))). (-13.64 = -13.92 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:11 2006