Locus 6666

Sequence ID 3R_DroMel_CAF1
Location 17,533,033 – 17,533,125
Length 92
Max. P 0.782082
window10842

overview

Window 2

Location 17,533,033 – 17,533,125
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 96.88
Mean single sequence MFE -25.79
Consensus MFE -22.88
Energy contribution -23.10
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.782082
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17533033 92 + 27905053
UGCAAAUCUGCAGUGCGAUGGAUGAACCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCCUGGUACUGCACAUUGG
....(((.((((((((.(.((((.(..(((((((((..((..((.....))...))..)))))))))..).)).))).)))))))).))).. ( -26.50)
>DroSec_CAF1 41764 92 + 1
UGCAAAUCUGCAGUGCGAUGGAUGAACCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCCUGGUACUGCACAUUGG
....(((.((((((((.(.((((.(..(((((((((..((..((.....))...))..)))))))))..).)).))).)))))))).))).. ( -26.50)
>DroSim_CAF1 42675 92 + 1
UGCAAAUCUGCAGUGCGAUGGAUGAACCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCCUGGUACUGCACAUUGG
....(((.((((((((.(.((((.(..(((((((((..((..((.....))...))..)))))))))..).)).))).)))))))).))).. ( -26.50)
>DroEre_CAF1 42225 92 + 1
UGCAAAUCUGCAGUGUGAUGAAUGAACCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCUCGGUACUGCACAUUGG
..........(((((((......(.((((((.((.((((...(((...............))).))))...)).)))))).)..))))))). ( -23.06)
>DroYak_CAF1 36873 92 + 1
UGCAAAUCUGCAGUGCGAUGGAUGAACCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCCCGGUGCUGCACAUUGG
....(((.(((((..(...((((.(..(((((((((..((..((.....))...))..)))))))))..).)).))..)..))))).))).. ( -24.10)
>DroAna_CAF1 41267 92 + 1
UGCAAAUCUGCAGUGCGAUGGAUGAGCCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCCUUGGACUGCACAUUGG
....(((.((((((.(((.((((.((.(((((((((..((..((.....))...))..))))))))).)).)).))))).)))))).))).. ( -28.10)
>consensus
UGCAAAUCUGCAGUGCGAUGGAUGAACCGAGGGUAACAAUUUGGUUUUACUUUUAUCUUUGCCUUUGUCUGAUGCCUGGUACUGCACAUUGG
....(((.((((((((.(.(.((.(..(((((((((..((..((.....))...))..)))))))))..).)).).).)))))))).))).. (-22.88 = -23.10 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:06 2006