Locus 6665

Sequence ID 3R_DroMel_CAF1
Location 17,529,355 – 17,529,456
Length 101
Max. P 0.989172
window10841

overview

Window 1

Location 17,529,355 – 17,529,456
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 79.24
Mean single sequence MFE -25.64
Consensus MFE -19.66
Energy contribution -19.50
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -2.44
Structure conservation index 0.77
SVM decision value 2.15
SVM RNA-class probability 0.989172
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17529355 101 + 27905053
AUCUCAUAACCCUCUUCACUUAAUGAAAUAUACUUUUUUUGAGUGUAGUCUAUCGCAUAUAUAGCGGCACAUACUCGAAUGUGGCCGUUAUGGUUGCAGAA
.(((.........((.(((((((.((((.....)))).))))))).))......(((..(((((((((((((......)))).)))))))))..)))))). ( -27.50)
>DroSec_CAF1 37999 101 + 1
AUCUCAUAAACCUCUAUAUUAUAUGAAGAAUGAUUUCUUUGAGUGUAGUCUAUCGCAUAUAUAGCGGCACAUACUCGAAUGUGGCCGUUAUGGUUGCAGAA
.(((.........(((((((....((((((....)))))).)))))))......(((..(((((((((((((......)))).)))))))))..)))))). ( -28.10)
>DroSim_CAF1 38857 101 + 1
AUCUCAUAAACCUCUAUAUUAUAUGAAGAAUGAUUUUUUUGAGUGUAGUCUAUCGCAUAUAUAGCGGCACAUACUCGAAUGUGGCCGUUAUGGUUGCAGAA
.(((.........(((((((....((((((....)))))).)))))))......(((..(((((((((((((......)))).)))))))))..)))))). ( -25.50)
>DroEre_CAF1 38419 88 + 1
AUUUCAUCAAA-------------CUCGAUGCAUUUUUUGUAGUGUUGUCUAUCGCAUAUAUAGCGGCACAUACUCGAAUGUGGCCGUUAUGGUUGCAGAA
......((...-------------...((((((((......)))).))))....(((..(((((((((((((......)))).)))))))))..))).)). ( -23.20)
>DroYak_CAF1 33153 84 + 1
ACUGAAU-----------------GUAGUAAUAUUUUUUUUAGUGUUGCCUAUCGCAUAUGUAGCGGCACAUACUCGAAUGUGGCCGUUAUGGUUGCAGAA
.......-----------------...((((((((......)))))))).....(((..(((((((((((((......)))).)))))))))..))).... ( -23.90)
>consensus
AUCUCAUAAACCUCU__A_U__AUGAAGAAUGAUUUUUUUGAGUGUAGUCUAUCGCAUAUAUAGCGGCACAUACUCGAAUGUGGCCGUUAUGGUUGCAGAA
......................................................(((..(((((((((((((......)))).)))))))))..))).... (-19.66 = -19.50 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:05 2006