| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,517,221 – 17,517,322 |
| Length | 101 |
| Max. P | 0.938918 |
| Location | 17,517,221 – 17,517,322 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 69.76 |
| Mean single sequence MFE | -29.06 |
| Consensus MFE | -7.96 |
| Energy contribution | -8.58 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.27 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.938918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17517221 101 - 27905053 GAAUUGGGAUUGGCGAUUUUG--GAUGGAGACCGAAGUUGGAGCUGCAGUUGGGAC----ACCAG---CAGGCAGCAUUGAACAUGAAAAUUGUAGCGUGUAAG-UUGCAG---- .............((((((((--(.......)))))))))..(((((.(((((...----.))))---)..)))))...............((((((......)-))))).---- ( -30.90) >DroSec_CAF1 25997 101 - 1 GAAUUGGGAUUGGGGAUUUCG--GACGGAGACCGAAGUUGGAGCUGCAGUUGGGAC----ACCAG---CAGGCAGCAUGGAACAUGAAAAUUGUAGCGUGUAAG-UUGCAG---- ..............(((((((--(.......))))))))...(((((.(((((...----.))))---)..)))))...............((((((......)-))))).---- ( -30.70) >DroSim_CAF1 26747 101 - 1 GAAUUGGGAUUGGGGAUUUCG--GAUGGAGACCGAAGUUGGAGCUGCAGUUGGGAC----ACCAG---CAGGCAGCAUGGAACAUGAAAAUUGUAGCGUGUAAG-UUGCAG---- ..............(((((((--(.......))))))))...(((((.(((((...----.))))---)..)))))...............((((((......)-))))).---- ( -30.70) >DroWil_CAF1 28882 98 - 1 GAGAAACAGGAGG-AAGAUAGUGAGGUGAA--UCAAGGUGGAGGCUGGUCU-------------GGCAGCUGC-ACAUGGAACAUGAAAAUUGUAGCGUGUAAAGAGGCAGCAGC ......((((.((-...((..(((......--)))..)).....))..)))-------------)((.(((((-(((((..(((.......)))..)))))......))))).)) ( -19.10) >DroAna_CAF1 26099 104 - 1 GAGUUAUAGUUGG-GAGCUGG--AGCUGAAGCUGAAGCUGGAGCUUGAGCUGGGAUUGUGACCAG---CCAGCA-CAUGGAACAUGAAAAUUGUAGCGUGUACA-UUGCAG---A ..(((((((((..-..(((((--((((..(((....)))..)))))..(((((........))))---))))).-((((...))))..))))))))).......-......---. ( -33.90) >consensus GAAUUGGGAUUGG_GAUUUCG__GACGGAGACCGAAGUUGGAGCUGCAGUUGGGAC____ACCAG___CAGGCAGCAUGGAACAUGAAAAUUGUAGCGUGUAAG_UUGCAG____ ..........................................(((....((((........)))).....))).(((((..(((.......)))..))))).............. ( -7.96 = -8.58 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:02 2006