Locus 6661

Sequence ID 3R_DroMel_CAF1
Location 17,510,246 – 17,510,337
Length 91
Max. P 0.521825
window10837

overview

Window 7

Location 17,510,246 – 17,510,337
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 76.06
Mean single sequence MFE -11.21
Consensus MFE -6.59
Energy contribution -6.59
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.521825
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17510246 91 - 27905053
ACAGGAAACUGAAACUGCUUAACCAUUAAAGGCUGCCUCUGAAUUCCAAAAACCAACCAGCCAAAAAAAAAAAAAAAGAGAAACAU-UUUGC
.(((....)))...................(((((......................)))))........................-..... ( -11.75)
>DroPse_CAF1 21231 72 - 1
ACAGGAAACUGAAACUGCUUAACCAUUAAAAGGCAUCUCU-----------------CAGCCAUCGAA---AUACAAGAGAAAAAUGUUUGC
.(((....)))(((((((((..........)))))(((((-----------------...........---.....))))).....)))).. ( -11.99)
>DroSec_CAF1 19096 85 - 1
ACAGGAAACUGAAACUGCUUAACCAUUAAAGGCUGCCUCUGAAUUCCAAAAACCAACCAGUCAAAAA------AAAAGAGAAACAU-UUUGC
.(((....)))...................(((((......................))))).....------.............-..... (  -9.05)
>DroSim_CAF1 19736 88 - 1
ACAGGAAACUGAAACUGCUUAACCAUUAAAGGCUGCCUCUGAAUUCCAAAAACCAACCAGCCAAAAAA---AAAAAAGAGAAACAU-UUUGC
.(((....)))...................(((((......................)))))......---...............-..... ( -11.75)
>DroEre_CAF1 19545 77 - 1
ACAGGAAACUGAAACUGCUUAACCAUUAAAGGCUGCCUCUGAAUUCCAAAAACCGA--------A------AAAAAAGAGAAACAU-UUUGC
.(((....))).....((((.........))))...((((...(((........))--------)------.....))))......-..... ( -10.00)
>DroPer_CAF1 25617 72 - 1
ACAGGAAACUGAAACUGCUUAACCAUUAAAAGGCAUCUCU-----------------CAGCCAUCGAA---AUACAAGAGAAAAAUGUCUGC
.(((....)))...................((((((.(((-----------------(..........---......))))...)))))).. ( -12.69)
>consensus
ACAGGAAACUGAAACUGCUUAACCAUUAAAGGCUGCCUCUGAAUUCCAAAAACCAA_CAGCCAAAAAA___AAAAAAGAGAAACAU_UUUGC
.(((....))).........................((((....................................))))............ ( -6.59 =  -6.59 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:01 2006