Locus 6660

Sequence ID 3R_DroMel_CAF1
Location 17,509,528 – 17,509,618
Length 90
Max. P 0.812347
window10836

overview

Window 6

Location 17,509,528 – 17,509,618
Length 90
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 77.71
Mean single sequence MFE -12.22
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.75
Structure conservation index -0.00
SVM decision value 0.65
SVM RNA-class probability 0.812347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17509528 90 + 27905053
CGCCUCUAAAACUGUAAAUGUUACUUGC----UUGCAGACCUAGCAAGCAACC---AACAAGAAAUAAACAAAA-AUAAUUACAAAUAAACAAAACGG-------
............(((((.((((..((((----((((.......))))))))..---))))(....)........-....)))))..............------- ( -14.70)
>DroSec_CAF1 18394 93 + 1
CGCCUCUAAAACUGUAAAUGUUACUUGC----UUGCAGACCUUGCUAGCCACCAGCAACAAGAAAUAAACAAAA-AUAAUUACAAAUAAACAAAACGG-------
....(((....((((((..((.....))----))))))...(((((.......)))))..)))...........-.......................------- (  -8.40)
>DroSim_CAF1 19017 93 + 1
AGACUCUAAAACUGUAAAUGUUGCUUGC----UUGCAGACCUAGCAAGCCAGCAGCAACAAGAAAUAAACAAAA-AUUAUUACAAAUAAACAAAACGG-------
...........((((...(((((((.((----((((.......)))))).)))))))....(.(((((......-.))))).)...........))))------- ( -21.30)
>DroEre_CAF1 18849 90 + 1
CGCCUCUAAAACUGUAUAUGAUACUUGC----UUCAAGACCUAGCAAAGAACC---AGCAAGAAAUAAACAAAA-AUAAUUACAAAUAAACAAAACGG-------
............(((.(((....(((((----(((.............))...---))))))..))).)))...-.......................------- (  -6.32)
>DroWil_CAF1 21076 97 + 1
CACCUCUAAAACUGUAAAUGUUACUUGGACACUCACACACACAGAGA-----C---ACACAGAUUUAUGCAAAAUAUAAUUACAAACAAACAAAAUAGAGAACGG
...(((((...((((...((((.....))))(((.........))).-----.---..))))..(((((.....)))))................)))))..... ( -10.40)
>consensus
CGCCUCUAAAACUGUAAAUGUUACUUGC____UUGCAGACCUAGCAAGCAACC___AACAAGAAAUAAACAAAA_AUAAUUACAAAUAAACAAAACGG_______
......................................................................................................... (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:00 2006